functional annotation |
Function |
chromatin protein family |
|
GO BP |
GO:0010555 [list] [network] response to mannitol
|
(18 genes)
|
IEP
|
|
GO:0042752 [list] [network] regulation of circadian rhythm
|
(57 genes)
|
IGI
|
|
GO:2000028 [list] [network] regulation of photoperiodism, flowering
|
(63 genes)
|
IMP
|
|
GO:0048511 [list] [network] rhythmic process
|
(131 genes)
|
IEA
|
|
GO:0000398 [list] [network] mRNA splicing, via spliceosome
|
(172 genes)
|
IPI
|
|
GO:0010228 [list] [network] vegetative to reproductive phase transition of meristem
|
(173 genes)
|
IMP
|
|
GO:0008380 [list] [network] RNA splicing
|
(272 genes)
|
IMP
ISS
|
|
GO:0009651 [list] [network] response to salt stress
|
(485 genes)
|
IEP
|
|
GO:0045893 [list] [network] positive regulation of transcription, DNA-templated
|
(495 genes)
|
IDA
|
|
GO:0009737 [list] [network] response to abscisic acid
|
(574 genes)
|
IEP
|
|
|
GO CC |
|
GO MF |
|
KEGG |
ath03040 [list] [network] Spliceosome (192 genes) |
|
Protein |
NP_001031291.1
NP_001185416.1
NP_565151.1
|
BLAST |
NP_001031291.1
NP_001185416.1
NP_565151.1
|
Orthologous |
[Ortholog page]
LOC732608 (gma)
LOC4330796 (osa)
LOC7488937 (ppo)
LOC11415940 (mtr)
LOC100245841 (vvi)
LOC100286002 (zma)
LOC101256945 (sly)
LOC103832171 (bra)
|
Subcellular localization wolf |
nucl 9,
cyto_nucl 5
|
(predict for NP_001031291.1)
|
nucl 9,
cyto_nucl 5
|
(predict for NP_001185416.1)
|
nucl 9,
cyto_nucl 5
|
(predict for NP_565151.1)
|
|
Subcellular localization TargetP |
other 8
|
(predict for NP_001031291.1)
|
other 8
|
(predict for NP_001185416.1)
|
other 8
|
(predict for NP_565151.1)
|
|
Gene coexpression |
Network*for coexpressed genes |
KEGG* ID |
Title |
#genes |
Link to the KEGG* map (Multiple genes) |
ath03040 |
Spliceosome |
4 |
|
Genes directly connected with SKIP on the network
coex z* |
Locus |
Function* |
Coexpression detail |
Entrez Gene ID* |
11.4 |
CDC5 |
cell division cycle 5 |
[detail] |
837506 |
10.1 |
AT1G11480 |
eukaryotic translation initiation factor-like protein |
[detail] |
837691 |
9.7 |
RCY1 |
arginine-rich cyclin 1 |
[detail] |
817183 |
9.2 |
AT4G01000 |
Ubiquitin-like superfamily protein |
[detail] |
826414 |
8.1 |
AT2G45620 |
Nucleotidyltransferase family protein |
[detail] |
819170 |
7.9 |
AT3G09850 |
D111/G-patch domain-containing protein |
[detail] |
820143 |
7.7 |
AT5G12120 |
Ubiquitin-associated/translation elongation factor EF1B protein |
[detail] |
831085 |
5.6 |
AT1G09320 |
agenet domain-containing protein |
[detail] |
837453 |
|
Coexpressed gene list |
[Coexpressed gene list for SKIP]
|
Gene expression |
All samples |
[Expression pattern for all samples]
|
AtGenExpress* (Development) |
264486_at
X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.
|
AtGenExpress* (Stress) |
264486_at
X axis is samples (pdf file), and Y axis is log2-expression.
|
AtGenExpress* (Hormone) |
264486_at
X axis is samples (xls file), and Y axis is log-expression.
|