[←][→] ath   At1g03960 Gene
functional annotation
Function   Calcium-binding EF hand family protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
GO:0005509 [list] [network] calcium ion binding  (132 genes)  IEA  
KEGG ath03015 [list] [network] mRNA surveillance pathway (119 genes)
Protein NP_001320288.1  NP_001320289.1  NP_001320290.1  NP_001320291.1  NP_001320292.1  NP_171892.2  NP_973757.1 
BLAST NP_001320288.1  NP_001320289.1  NP_001320290.1  NP_001320291.1  NP_001320292.1  NP_171892.2  NP_973757.1 
Orthologous [Ortholog page] AT5G28850 (ath)  AT5G28900 (ath)  AT5G44090 (ath)  AT1G54450 (ath)  LOC4348893 (osa)  LOC7476933 (ppo)  LOC7479742 (ppo)  LOC7487186 (ppo)  LOC7487707 (ppo)  LOC11424481 (mtr)  LOC11434607 (mtr)  LOC11435115 (mtr)  LOC100792998 (gma)  LOC100793000 (gma)  LOC100799748 (gma)  LOC100804366 (gma)  LOC100807531 (gma)  LOC100815724 (gma)  LOC101245749 (sly)  LOC101251680 (sly)  LOC103836595 (bra)  LOC103837305 (bra)  LOC103839205 (bra)  LOC103844328 (bra)  LOC103874595 (bra)  LOC123045523 (tae)  LOC123121281 (tae)  LOC123430999 (hvu) 
Subcellular
localization
wolf
cyto 6,  chlo 2,  nucl 1  (predict for NP_001320288.1)
chlo 9,  nucl 1,  mito 1  (predict for NP_001320289.1)
cyto 4,  chlo 2,  cyto_E.R. 2,  plas 1,  golg_plas 1  (predict for NP_001320290.1)
cyto 6,  chlo 2,  nucl 1  (predict for NP_001320291.1)
nucl 6,  cyto 3  (predict for NP_001320292.1)
nucl 6,  cyto 3,  cysk_nucl 3  (predict for NP_171892.2)
cyto 6,  chlo 2,  nucl 1  (predict for NP_973757.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001320288.1)
chlo 9  (predict for NP_001320289.1)
other 5,  mito 3  (predict for NP_001320290.1)
other 8  (predict for NP_001320291.1)
other 9  (predict for NP_001320292.1)
other 9  (predict for NP_171892.2)
other 8  (predict for NP_973757.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 2
Genes directly connected with AT1G03960 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
6.7 SUF4 zinc finger (C2H2 type) family protein [detail] 839984
5.3 AT3G57170 N-acetylglucosaminyl transferase component family protein / Gpi1 family protein [detail] 824884
5.2 SUV2 protein dimerization [detail] 834601
4.7 MRE11 DNA repair and meiosis protein (Mre11) [detail] 835514
4.3 AT3G27930 beta-galactosidase [detail] 822417
Coexpressed
gene list		 [Coexpressed gene list for AT1G03960]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
265090_at
265090_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
265090_at
265090_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
265090_at
265090_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 839361      
Refseq ID (protein) NP_001320288.1 
NP_001320289.1 
NP_001320290.1 
NP_001320291.1 
NP_001320292.1 
NP_171892.2 
NP_973757.1 


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