[←][→] ath   AT1G06670 Gene
functional annotation
Function   nuclear DEIH-boxhelicase  
GO BP
GO:0006259 [list] [network] DNA metabolic process  (441 genes)  ISS  
GO CC
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA IDA ISM  
GO MF
GO:0003678 [list] [network] DNA helicase activity  (34 genes)  ISS  
GO:0003723 [list] [network] RNA binding  (1790 genes)  IBA  
GO:0003677 [list] [network] DNA binding  (2280 genes)  IDA  
KEGG ath03018 [list] [network] RNA degradation (113 genes)
Protein NP_001321998.1  NP_172152.1 
BLAST NP_001321998.1  NP_172152.1 
Orthologous [Ortholog page] HVT1 (ath)  LOC4325502 (osa)  LOC7464663 (ppo)  LOC11429946 (mtr)  LOC100260829 (vvi)  LOC100384291 (zma)  LOC100782189 (gma)  LOC100810272 (gma)  LOC101247633 (sly)  LOC103865072 (bra)  LOC103867932 (bra) 
Subcellular
localization
wolf
plas 7,  nucl 2  (predict for NP_001321998.1)
plas 7,  nucl 2  (predict for NP_172152.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001321998.1)
other 8  (predict for NP_172152.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 4
ath03013 RNA transport 4
ath00970 Aminoacyl-tRNA biosynthesis 2
Genes directly connected with NIH on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
10.5 TWN2 valyl-tRNA synthetase / valine-tRNA ligase (VALRS) [detail] 838023
9.3 AT3G11964 RIBOSOMAL RNA PROCESSING 5 [detail] 820370
9.2 EIF3A eukaryotic translation initiation factor 3A [detail] 826746
8.8 PUM23 pumilio 23 [detail] 843564
8.0 AT1G16800 P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 838251
7.7 AT4G32420 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein [detail] 829377
7.4 AT5G06350 ARM repeat superfamily protein [detail] 830523
Coexpressed
gene list		 [Coexpressed gene list for NIH]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
262636_at
262636_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
262636_at
262636_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
262636_at
262636_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 837177      
Refseq ID (protein) NP_001321998.1 
NP_172152.1 


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