[][] ath   At1g09140 Gene
functional annotation
Function   SERINE-ARGININE PROTEIN 30 Plant GARDENPlant GARDEN JBrowse
GO BP
GO CC
GO:0005829 [list] [network] cytosol  (2559 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath03040 [list] [network] Spliceosome (203 genes)
Protein NP_001320500.1  NP_172386.3  NP_683288.2 
BLAST NP_001320500.1  NP_172386.3  NP_683288.2 
Orthologous [Ortholog page] LOC780660 (tae)LOC780668 (tae)SR34b (ath)SR34 (ath)LOC4332806 (osa)LOC4338552 (osa)LOC7481727 (ppo)LOC11412312 (mtr)LOC11424462 (mtr)LOC11430016 (mtr)LOC18096446 (ppo)LOC18098659 (ppo)LOC100789847 (gma)LOC100794282 (gma)LOC100796900 (gma)LOC101257012 (sly)LOC103836748 (bra)LOC103868210 (bra)LOC103871643 (bra)LOC112323219 (ppo)LOC123051591 (tae)LOC123053202 (tae)LOC123061814 (tae)LOC123070505 (tae)LOC123078916 (tae)LOC123097510 (tae)LOC123424755 (hvu)LOC123444166 (hvu)LOC123448632 (hvu)
Subcellular
localization
wolf
cyto 4,  nucl 3,  extr 1,  cysk_nucl 1,  nucl_plas 1  (predict for NP_001320500.1)
cyto 6,  nucl 2,  chlo 1,  extr 1  (predict for NP_172386.3)
cyto 6,  nucl 2,  chlo 1,  mito 1,  extr 1,  chlo_mito 1  (predict for NP_683288.2)
Subcellular
localization
TargetP
other 8,  mito 7  (predict for NP_001320500.1)
other 8,  mito 7  (predict for NP_172386.3)
other 8,  mito 7  (predict for NP_683288.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
Genes directly connected with SR30 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
10.3 SCL33 SC35-like splicing factor 33 [detail] 841976
9.2 AT5G25560 CHY-type/CTCHY-type/RING-type Zinc finger protein [detail] 832631
8.3 SR34b RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 828027
5.1 AT3G24100 Uncharacterized protein family SERF [detail] 821996
Coexpressed
gene list
[Coexpressed gene list for SR30]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
264255_at
264255_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
264255_at
264255_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
264255_at
264255_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 837433    
Refseq ID (protein) NP_001320500.1 
NP_172386.3 
NP_683288.2 


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