[←][→] ath   AT4G02430 Gene
functional annotation
Function   RNA-binding (RRM/RBD/RNP motifs) family protein  
GO BP
GO:0000381 [list] [network] regulation of alternative mRNA splicing, via spliceosome  (30 genes)  IBA  
GO:0045292 [list] [network] mRNA cis splicing, via spliceosome  (38 genes)  IBA  
GO CC
GO:0016607 [list] [network] nuclear speck  (86 genes)  IBA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA ISM  
GO MF
GO:0003723 [list] [network] RNA binding  (1790 genes)  IBA  
KEGG ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_001319845.1  NP_001328194.1  NP_001328195.1  NP_849537.1 
BLAST NP_001319845.1  NP_001328194.1  NP_001328195.1  NP_849537.1 
Orthologous [Ortholog page] SR30 (ath)  SR34 (ath)  LOC4332806 (osa)  LOC4338552 (osa)  LOC7462688 (ppo)  LOC7481727 (ppo)  LOC11410860 (mtr)  LOC11412312 (mtr)  LOC11424462 (mtr)  LOC11430016 (mtr)  LOC100217203 (zma)  LOC100249315 (vvi)  LOC100255499 (vvi)  LOC100284054 (zma)  LOC100285019 (zma)  LOC100789847 (gma)  LOC100794282 (gma)  LOC101247256 (sly)  LOC101257012 (sly)  LOC103836748 (bra)  LOC103868210 (bra)  LOC103871643 (bra) 
Subcellular
localization
wolf
nucl 4,  chlo 3,  extr 1,  mito 1,  pero 1  (predict for NP_001319845.1)
nucl 8,  cyto 1  (predict for NP_001328194.1)
nucl 8,  cyto 1  (predict for NP_001328195.1)
cyto 10  (predict for NP_849537.1)
Subcellular
localization
TargetP
scret 6,  mito 4  (predict for NP_001319845.1)
other 7,  mito 5  (predict for NP_001328194.1)
other 7,  mito 5  (predict for NP_001328195.1)
other 7,  mito 5  (predict for NP_849537.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
Genes directly connected with SR34b on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
10.7 AT5G25560 CHY-type/CTCHY-type/RING-type Zinc finger protein [detail] 832631
9.8 AT3G04160 U11/U12 small nuclear ribonucleoprotein [detail] 819571
9.8 ATU2AF65A U2 snRNP auxilliary factor, large subunit, splicing factor [detail] 829822
9.6 AT5G03830 CDK inhibitor P21 binding protein [detail] 831702
9.2 AT2G42330 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein [detail] 818834
8.6 AT3G02300 Regulator of chromosome condensation (RCC1) family protein [detail] 821167
7.9 AT2G25590 Plant Tudor-like protein [detail] 817098
7.0 AT3G24740 cellulose synthase, putative (DUF1644) [detail] 822072
6.7 AT3G59320 solute carrier family 35 protein (DUF914) [detail] 825101
6.3 AT1G48430 Dihydroxyacetone kinase [detail] 841264
6.3 AT1G27921 [detail] 6240288
6.2 AT5G56520 hypothetical protein [detail] 835753
6.2 AT3G59330 solute carrier family 35 protein (DUF914) [detail] 825102
5.0 AT1G01448 [detail] 5007657
4.0 AT4G06410 [detail] 28719787
3.8 AT1G07203 [detail] 28716617
Coexpressed
gene list		 [Coexpressed gene list for SR34b]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
255472_at
255472_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
255472_at
255472_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
255472_at
255472_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 828027      
Refseq ID (protein) NP_001319845.1 
NP_001328194.1 
NP_001328195.1 
NP_849537.1 


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