[←][→] ath   AT1G09140 Gene
functional annotation
Function   SERINE-ARGININE PROTEIN 30  
GO BP
GO:0000381 [list] [network] regulation of alternative mRNA splicing, via spliceosome  (30 genes)  IBA  
GO:0045292 [list] [network] mRNA cis splicing, via spliceosome  (38 genes)  IBA  
GO CC
GO:0016607 [list] [network] nuclear speck  (86 genes)  IBA  
GO:0005681 [list] [network] spliceosomal complex  (142 genes)  IEA  
GO:0005829 [list] [network] cytosol  (3506 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA IDA ISM  
GO MF
GO:0003723 [list] [network] RNA binding  (1790 genes)  IBA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_001320500.1  NP_172386.3  NP_683288.2 
BLAST NP_001320500.1  NP_172386.3  NP_683288.2 
Orthologous [Ortholog page] SR34b (ath)  SR34 (ath)  LOC4332806 (osa)  LOC4338552 (osa)  LOC7462688 (ppo)  LOC7481727 (ppo)  LOC11410860 (mtr)  LOC11412312 (mtr)  LOC11424462 (mtr)  LOC11430016 (mtr)  LOC100217203 (zma)  LOC100249315 (vvi)  LOC100255499 (vvi)  LOC100284054 (zma)  LOC100285019 (zma)  LOC100789847 (gma)  LOC100794282 (gma)  LOC101247256 (sly)  LOC101257012 (sly)  LOC103836748 (bra)  LOC103868210 (bra)  LOC103871643 (bra) 
Subcellular
localization
wolf
cyto 4,  nucl 3,  extr 1,  cysk_nucl 1,  nucl_plas 1  (predict for NP_001320500.1)
cyto 6,  nucl 2,  chlo 1,  extr 1  (predict for NP_172386.3)
cyto 6,  nucl 2,  chlo 1,  mito 1,  extr 1,  chlo_mito 1  (predict for NP_683288.2)
Subcellular
localization
TargetP
other 8,  mito 7  (predict for NP_001320500.1)
other 8,  mito 7  (predict for NP_172386.3)
other 8,  mito 7  (predict for NP_683288.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
Genes directly connected with SR30 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.2 SCL33 SC35-like splicing factor 33 [detail] 841976
7.6 SR45a RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 837246
7.1 AT3G02300 Regulator of chromosome condensation (RCC1) family protein [detail] 821167
5.6 AT3G57810 Cysteine proteinases superfamily protein [detail] 824950
5.0 AT5G18065 target of trans acting-siR480/255 protein [detail] 831535
Coexpressed
gene list		 [Coexpressed gene list for SR30]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
264255_at
264255_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
264255_at
264255_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
264255_at
264255_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 837433      
Refseq ID (protein) NP_001320500.1 
NP_172386.3 
NP_683288.2 


The preparation time of this page was 0.2 [sec].