[←][→] ath   At1g09890 Gene
functional annotation
Function   Rhamnogalacturonate lyase family protein      
GO BP
GO:0005975 [list] [network] carbohydrate metabolic process  (844 genes)  IEA  
GO CC
GO:0005576 [list] [network] extracellular region  (3154 genes)  ISM  
GO MF
GO:0102210 [list] [network] rhamnogalacturonan endolyase activity  (7 genes)  IEA  
GO:0030246 [list] [network] carbohydrate binding  (156 genes)  IEA  
GO:0016829 [list] [network] lyase activity  (284 genes)  ISS  
KEGG
Protein NP_001321190.1  NP_001321191.1  NP_001321192.1  NP_001321193.1  NP_172460.6 
BLAST NP_001321190.1  NP_001321191.1  NP_001321192.1  NP_001321193.1  NP_172460.6 
Orthologous [Ortholog page] AT2G22620 (ath)  AT4G24430 (ath)  AT4G37950 (ath)  AT1G09910 (ath)  LOC4346274 (osa)  LOC4346275 (osa)  LOC4349697 (osa)  LOC4351416 (osa)  LOC7464763 (ppo)  LOC7467217 (ppo)  LOC7467219 (ppo)  LOC7467220 (ppo)  LOC7476448 (ppo)  LOC7491976 (ppo)  LOC11412406 (mtr)  LOC11418533 (mtr)  LOC11422528 (mtr)  LOC11435489 (mtr)  LOC11442502 (mtr)  LOC11444270 (mtr)  LOC100776664 (gma)  LOC100786488 (gma)  LOC100791732 (gma)  LOC100793563 (gma)  LOC100814185 (gma)  LOC100814721 (gma)  LOC101248195 (sly)  LOC101248481 (sly)  LOC101250582 (sly)  LOC101260634 (sly)  LOC101261914 (sly)  LOC101262208 (sly)  LOC101267191 (sly)  LOC103835061 (bra)  LOC103837873 (bra)  LOC103864654 (bra)  LOC103871768 (bra)  LOC103871769 (bra)  LOC112327824 (ppo)  LOC123086385 (tae)  LOC123091660 (tae)  LOC123096574 (tae)  LOC123133780 (tae)  LOC123149816 (tae)  LOC123155535 (tae)  LOC123163716 (tae)  LOC123407127 (hvu)  LOC123446261 (hvu) 
Subcellular
localization
wolf
cyto 4,  nucl 2,  cysk 2,  cysk_nucl 2,  cyto_pero 2,  cyto_E.R. 2,  cyto_plas 2  (predict for NP_001321190.1)
cyto 5,  nucl 2,  cysk 2,  cysk_nucl 2  (predict for NP_001321191.1)
cyto 4,  E.R. 2,  chlo 1,  nucl 1,  plas 1,  nucl_plas 1  (predict for NP_001321192.1)
cyto 2,  vacu 2,  chlo 1,  extr 1,  E.R._vacu 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001321193.1)
cyto 7,  pero 1,  chlo 1,  cysk_plas 1  (predict for NP_172460.6)
Subcellular
localization
TargetP
other 7  (predict for NP_001321190.1)
other 7  (predict for NP_001321191.1)
other 7  (predict for NP_001321192.1)
other 7  (predict for NP_001321193.1)
other 8  (predict for NP_172460.6)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with AT1G09890 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
10.9 LAC11 laccase 11 [detail] 831887
10.6 AT3G62160 HXXXD-type acyl-transferase family protein [detail] 825389
10.5 AT1G58070 WEB family protein [detail] 842174
Coexpressed
gene list		 [Coexpressed gene list for AT1G09890]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
264688_at
264688_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
264688_at
264688_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
264688_at
264688_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 837521      
Refseq ID (protein) NP_001321190.1 
NP_001321191.1 
NP_001321192.1 
NP_001321193.1 
NP_172460.6 


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