ATTED-II : GeneID search result

[←][→] ath At1g31540 Gene

functional annotation

Function

Disease resistance protein (TIR-NBS-LRR class) family

GO BP

GO:0031347 [list] [network] regulation of defense response	(749 genes)	IEA
GO:0009755 [list] [network] hormone-mediated signaling pathway	(904 genes)	IEA
GO:0007165 [list] [network] signal transduction	(2054 genes)	IEA

GO CC

GO:0009506 [list] [network] plasmodesma	(871 genes)	HDA
GO:0005737 [list] [network] cytoplasm	(13880 genes)	ISM

GO MF

GO:0043531 [list] [network] ADP binding

(164 genes)

IEA

KEGG

Protein

NP_001117396.1 NP_001319123.1 NP_174439.2

BLAST

NP_001117396.1 NP_001319123.1 NP_174439.2

Orthologous

[Ortholog page] AT2G14080 (ath) AT2G16870 (ath) AT3G04220 (ath) AT3G44400 (ath) RPP1 (ath) AT3G44670 (ath) AT4G08450 (ath) AT4G11170 (ath) AT4G14370 (ath) AT5G11250 (ath) AT5G17970 (ath) AT5G18350 (ath) AT5G18360 (ath) AT5G18370 (ath) AT5G22690 (ath) AT5G38340 (ath) AT5G38850 (ath) AT5G40060 (ath) AT5G40910 (ath) AT5G41540 (ath) AT5G41550 (ath) AT5G41740 (ath) AT5G41750 (ath) TAO1 (ath) AT5G46260 (ath) AT5G46270 (ath) AT5G46450 (ath) RPS6 (ath) AT5G46490 (ath) AT5G46510 (ath) AT5G46520 (ath) AT5G49140 (ath) AT5G51630 (ath) AT5G58120 (ath) WRR4 (ath) AT1G56520 (ath) AT1G56540 (ath) AT1G63730 (ath) AT1G63740 (ath) AT1G63750 (ath) AT1G63870 (ath) AT1G63880 (ath) RLM1 (ath) AT1G65850 (ath) AT1G63860 (ath) LOC11417281 (mtr) LOC103827870 (bra) LOC103828258 (bra) LOC103828261 (bra) RGA9 (bra) LOC103831137 (bra) LOC103834349 (bra) LOC103835100 (bra) LOC103838106 (bra) LOC103838107 (bra) LOC103838108 (bra) LOC103838111 (bra) LOC103838330 (bra) LOC103838480 (bra) LOC103839222 (bra) LOC103839595 (bra) LOC103839607 (bra) LOC103839608 (bra) LOC103839960 (bra) LOC103841070 (bra) LOC103845841 (bra) LOC103845886 (bra) LOC103846927 (bra) LOC103848010 (bra) LOC103848882 (bra) LOC103848933 (bra) LOC103848935 (bra) LOC103850223 (bra) LOC103850388 (bra) LOC103851141 (bra) LOC103852503 (bra) LOC103853710 (bra) LOC103853713 (bra) LOC103853747 (bra) LOC103855958 (bra) LOC103856441 (bra) LOC103857384 (bra) LOC103859110 (bra) LOC103859130 (bra) LOC103860885 (bra) LOC103861433 (bra) LOC103862521 (bra) LOC103863922 (bra) LOC103864117 (bra) LOC103864602 (bra) LOC103865164 (bra)

Subcellular
localization
wolf

cyto 4, nucl 4, mito 1, pero 1, golg 1	(predict for NP_001117396.1)
cyto 6, nucl 1, mito 1, pero 1, cysk 1, golg 1, nucl_plas 1	(predict for NP_001319123.1)
cyto 6, nucl 1, mito 1, pero 1, cysk 1, golg 1, nucl_plas 1	(predict for NP_174439.2)

Subcellular
localization
TargetP

other 4	(predict for NP_001117396.1)
other 4	(predict for NP_001319123.1)
other 4	(predict for NP_174439.2)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with AT1G31540 on the network
coex z^*	Locus	Function^*	CoexViewer	Entrez Gene ID^*
13.1	AT5G46500	protein VARIATION IN COMPOUND TRIGGERED ROOT growth protein	[detail]	834693
9.1	RPS6	disease resistance protein (TIR-NBS-LRR class) family	[detail]	834690
7.8	AT5G46490	Disease resistance protein (TIR-NBS-LRR class) family	[detail]	834692
7.7	AT5G46260	disease resistance protein (TIR-NBS-LRR class) family	[detail]	834668
7.3	AT3G44400	Disease resistance protein (TIR-NBS-LRR class) family	[detail]	823565
6.9	AT1G56540	Disease resistance protein (TIR-NBS-LRR class) family	[detail]	842107
5.3	AT4G19520	disease resistance protein (TIR-NBS-LRR class) family	[detail]	827694

Coexpressed
gene list

[Coexpressed gene list for AT1G31540]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

256487_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

256487_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

256487_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	840044
Refseq ID (protein)	NP_001117396.1
	NP_001319123.1
	NP_174439.2

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