[←][→] ath   AT1G49480 Gene
functional annotation
Function   related to vernalization1 1  
GO BP
GO:0009409 [list] [network] response to cold  (411 genes)  IEP  
GO:0034613 [list] [network] cellular protein localization  (588 genes)  IDA  
GO CC
GO:0005886 [list] [network] plasma membrane  (3771 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IDA  
GO MF
GO:0003677 [list] [network] DNA binding  (2280 genes)  IDA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG
Protein NP_001322051.1  NP_001322052.1  NP_564547.1 
BLAST NP_001322051.1  NP_001322052.1  NP_564547.1 
Orthologous [Ortholog page] AT3G18960 (ath)  VRN1 (ath)  AT4G01580 (ath)  AT1G49475 (ath)  LOC7477988 (ppo)  LOC7490337 (ppo)  LOC11405350 (mtr)  LOC11405351 (mtr)  LOC11408476 (mtr)  LOC11408477 (mtr)  LOC11412282 (mtr)  LOC11418291 (mtr)  LOC11419551 (mtr)  LOC11426643 (mtr)  LOC11434552 (mtr)  LOC11435758 (mtr)  LOC11437270 (mtr)  LOC11438033 (mtr)  LOC11438683 (mtr)  LOC11440147 (mtr)  LOC11442747 (mtr)  LOC11443178 (mtr)  LOC11443561 (mtr)  LOC11446380 (mtr)  LOC25482671 (mtr)  LOC25482673 (mtr)  LOC25482710 (mtr)  LOC25483273 (mtr)  LOC25496315 (mtr)  LOC100264028 (vvi)  LOC100267202 (vvi)  LOC100779965 (gma)  LOC100789352 (gma)  LOC100793469 (gma)  LOC100793986 (gma)  LOC100800609 (gma)  LOC100806715 (gma)  LOC100813285 (gma)  LOC100815020 (gma)  LOC100815331 (gma)  LOC100818507 (gma)  LOC100819782 (gma)  LOC101244431 (sly)  LOC101244757 (sly)  LOC101248376 (sly)  LOC101249790 (sly)  LOC101259709 (sly)  LOC101260398 (sly)  LOC101261202 (sly)  LOC101261590 (sly)  LOC101264140 (sly)  LOC101266308 (sly)  LOC102661645 (gma)  LOC102661781 (gma)  LOC102669906 (gma)  LOC103832939 (bra)  LOC103832940 (bra)  LOC103837597 (bra)  LOC103859783 (bra)  LOC103868650 (bra)  LOC103869503 (bra)  LOC103869505 (bra)  LOC104644667 (sly)  LOC104645266 (sly)  LOC104645267 (sly)  LOC104646199 (sly)  LOC104646201 (sly)  LOC104649657 (sly)  LOC104878799 (vvi)  LOC104878813 (vvi)  LOC104880722 (vvi)  LOC104880725 (vvi)  LOC104880726 (vvi)  LOC104880727 (vvi)  LOC104880728 (vvi)  LOC106797693 (gma)  LOC109119543 (sly)  LOC109121519 (vvi)  LOC112416087 (mtr)  LOC112418283 (mtr)  LOC112418296 (mtr)  LOC112418315 (mtr) 
Subcellular
localization
wolf
nucl 9  (predict for NP_001322051.1)
nucl 9  (predict for NP_001322052.1)
nucl 9  (predict for NP_564547.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001322051.1)
other 8  (predict for NP_001322052.1)
other 8  (predict for NP_564547.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04145 Phagosome 2
ath04933 AGE-RAGE signaling pathway in diabetic complications 2
Genes directly connected with RTV1 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
6.6 VRN1 AP2/B3-like transcriptional factor family protein [detail] 821432
6.2 RAC3 RAC-like 3 [detail] 829654
5.0 AT1G19000 Homeodomain-like superfamily protein [detail] 838481
Coexpressed
gene list		 [Coexpressed gene list for RTV1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
262400_at
262400_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
262400_at
262400_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
262400_at
262400_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 841372      
Refseq ID (protein) NP_001322051.1 
NP_001322052.1 
NP_564547.1 


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