[←][→] ath   AT1G55310 Gene
functional annotation
Function   SC35-like splicing factor 33  
GO BP
GO:0000381 [list] [network] regulation of alternative mRNA splicing, via spliceosome  (30 genes)  IBA  
GO:0045292 [list] [network] mRNA cis splicing, via spliceosome  (38 genes)  IBA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (172 genes)  IPI  
GO:0008380 [list] [network] RNA splicing  (272 genes)  NAS  
GO CC
GO:0035061 [list] [network] interchromatin granule  (2 genes)  IDA  
GO:0016607 [list] [network] nuclear speck  (86 genes)  IBA IDA  
GO:0005681 [list] [network] spliceosomal complex  (142 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (477 genes)  IDA  
GO:0005886 [list] [network] plasma membrane  (3771 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA ISM  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IEA  
GO MF
GO:0042802 [list] [network] identical protein binding  (288 genes)  IPI  
GO:0003723 [list] [network] RNA binding  (1790 genes)  IBA ISS  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_001031195.4  NP_001185236.2  NP_001319238.1  NP_001319239.1  NP_001321066.1  NP_001321067.1  NP_564685.4 
BLAST NP_001031195.4  NP_001185236.2  NP_001319238.1  NP_001319239.1  NP_001321066.1  NP_001321067.1  NP_564685.4 
Orthologous
Subcellular
localization
wolf
nucl 6,  mito 2,  chlo 1,  plas 1  (predict for NP_001031195.4)
nucl 9  (predict for NP_001185236.2)
nucl 6,  mito 2,  chlo 1,  plas 1  (predict for NP_001319238.1)
nucl 7,  chlo 1,  mito 1,  chlo_mito 1  (predict for NP_001319239.1)
nucl 9  (predict for NP_001321066.1)
nucl 9  (predict for NP_001321067.1)
nucl 6,  chlo 1,  mito 1,  chlo_mito 1  (predict for NP_564685.4)
Subcellular
localization
TargetP
chlo 6,  mito 6  (predict for NP_001031195.4)
other 9  (predict for NP_001185236.2)
chlo 6,  mito 6  (predict for NP_001319238.1)
mito 6,  chlo 6  (predict for NP_001319239.1)
other 9  (predict for NP_001321066.1)
other 9  (predict for NP_001321067.1)
chlo 6,  mito 6  (predict for NP_564685.4)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
Genes directly connected with SCL33 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.9 SR45a RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 837246
8.2 SR30 SERINE-ARGININE PROTEIN 30 [detail] 837433
6.8 AT2G48100 Exonuclease family protein [detail] 819422
Coexpressed
gene list		 [Coexpressed gene list for SCL33]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
259666_at
259666_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
259666_at
259666_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
259666_at
259666_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 841976      
Refseq ID (protein) NP_001031195.4 
NP_001185236.2 
NP_001319238.1 
NP_001319239.1 
NP_001321066.1 
NP_001321067.1 
NP_564685.4 


The preparation time of this page was 0.2 [sec].