[←][→] ath   AT2G16940 Gene
functional annotation
Function   Splicing factor, CC1-like protein  
GO BP
GO:0006397 [list] [network] mRNA processing  (376 genes)  IEA  
GO CC
GO:0005829 [list] [network] cytosol  (3506 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IEA ISM  
GO MF
KEGG
Protein NP_001189537.1  NP_001189538.1  NP_001324438.1  NP_001324439.1  NP_565399.1 
BLAST NP_001189537.1  NP_001189538.1  NP_001324438.1  NP_001324439.1  NP_565399.1 
Orthologous [Ortholog page] AT5G09880 (ath)  LOC7453655 (ppo)  LOC7476432 (ppo)  LOC9269341 (osa)  LOC9270364 (osa)  LOC11423679 (mtr)  LOC11426905 (mtr)  LOC100243992 (vvi)  LOC100253813 (vvi)  LOC100274411 (zma)  LOC100278875 (zma)  LOC100383130 (zma)  LOC100789839 (gma)  LOC100793461 (gma)  LOC100795336 (gma)  LOC100802446 (gma)  LOC100818613 (gma)  LOC101259103 (sly)  LOC103846010 (bra)  LOC103846856 (bra)  LOC103850353 (bra)  LOC112417170 (mtr) 
Subcellular
localization
wolf
nucl 10  (predict for NP_001189537.1)
nucl 10  (predict for NP_001189538.1)
chlo 4,  nucl 4,  cyto 3  (predict for NP_001324438.1)
chlo 4,  nucl 4,  cyto 3  (predict for NP_001324439.1)
nucl 10  (predict for NP_565399.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001189537.1)
other 8  (predict for NP_001189538.1)
other 7  (predict for NP_001324438.1)
other 7  (predict for NP_001324439.1)
other 8  (predict for NP_565399.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 10
Genes directly connected with AT2G16940 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.8 PRP39 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 839314
8.6 AT5G09880 Splicing factor, CC1-like protein [detail] 830848
8.0 ATU2AF65A U2 snRNP auxilliary factor, large subunit, splicing factor [detail] 829822
7.1 AT1G30590 RNA polymerase I specific transcription initiation factor RRN3 protein [detail] 839939
6.4 TTL coiled coil protein [detail] 828592
6.1 AT4G35785 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 829732
Coexpressed
gene list		 [Coexpressed gene list for AT2G16940]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
266534_at
266534_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
266534_at
266534_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
266534_at
266534_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 816197      
Refseq ID (protein) NP_001189537.1 
NP_001189538.1 
NP_001324438.1 
NP_001324439.1 
NP_565399.1 


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