[←][→] ath   At2g28290 Gene
functional annotation
Function   P-loop containing nucleoside triphosphate hydrolases superfamily protein      
GO BP
GO:0010199 [list] [network] organ boundary specification between lateral organs and the meristem  (9 genes)  IGI  
GO:2000022 [list] [network] regulation of jasmonic acid mediated signaling pathway  (28 genes)  IMP  
GO:0010104 [list] [network] regulation of ethylene-activated signaling pathway  (30 genes)  IMP  
GO:1900150 [list] [network] regulation of defense response to fungus  (40 genes)  IMP  
GO:0040029 [list] [network] epigenetic regulation of gene expression  (146 genes)  IMP  
GO:0009908 [list] [network] flower development  (492 genes)  IMP  
GO:0009611 [list] [network] response to wounding  (816 genes)  IEP TAS  
GO CC
GO:0005829 [list] [network] cytosol  (2559 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA ISM  
GO MF
GO:0003682 [list] [network] chromatin binding  (105 genes)  IDA  
GO:0016887 [list] [network] ATP hydrolysis activity  (115 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG
Protein NP_001077971.1  NP_001325347.1  NP_001325348.1  NP_001325349.1  NP_850116.1  NP_850117.1 
BLAST NP_001077971.1  NP_001325347.1  NP_001325348.1  NP_001325349.1  NP_850116.1  NP_850117.1 
Orthologous [Ortholog page] LOC7475387 (ppo)  LOC9267065 (osa)  LOC11418353 (mtr)  LOC18101704 (ppo)  LOC100790172 (gma)  LOC100815262 (gma)  LOC101247785 (sly)  LOC103857840 (bra)  LOC112328987 (ppo)  LOC123149820 (tae)  LOC123155940 (tae)  LOC123170870 (tae)  LOC123413476 (hvu) 
Subcellular
localization
wolf
nucl 10  (predict for NP_001077971.1)
nucl 10  (predict for NP_001325347.1)
nucl 10  (predict for NP_001325348.1)
nucl 10  (predict for NP_001325349.1)
nucl 10  (predict for NP_850116.1)
nucl 10  (predict for NP_850117.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001077971.1)
other 8  (predict for NP_001325347.1)
other 8  (predict for NP_001325348.1)
other 8  (predict for NP_001325349.1)
other 8  (predict for NP_850116.1)
other 8  (predict for NP_850117.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
Genes directly connected with SYD on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
18.5 AT2G17930 Phosphatidylinositol 3- and 4-kinase family protein with FAT domain-containing protein [detail] 816303
14.7 BIG auxin transport protein (BIG) [detail] 820398
13.6 BRM transcription regulatory protein SNF2 [detail] 819210
12.8 CHR4 chromatin remodeling 4 [detail] 834510
11.8 WAVE5 SCAR family protein [detail] 827594
11.1 AT3G15120 P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 820743
10.9 AT5G61140 U5 small nuclear ribonucleoprotein helicase [detail] 836235
10.7 SAB HYPERSENSITIVE TO PI STARVATION 4 [detail] 842193
10.5 DME HhH-GPD base excision DNA repair family protein [detail] 830335
9.6 PTM PHD type transcription factor with transmembrane domain protein (PTM) [detail] 833475
9.4 ATM Serine/Threonine-kinase ATM-like protein [detail] 823975
9.0 GSL03 glucan synthase-like 3 [detail] 817755
8.5 MOR1 ARM repeat superfamily protein [detail] 818131
7.0 DCL4 dicer-like 4 [detail] 832154
6.0 AT4G01020 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-like protein [detail] 826439
4.6 DML1 demeter-like 1 [detail] 818224
Coexpressed
gene list		 [Coexpressed gene list for SYD]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
265542_at
265542_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
265542_at
265542_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
265542_at
265542_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 817375      
Refseq ID (protein) NP_001077971.1 
NP_001325347.1 
NP_001325348.1 
NP_001325349.1 
NP_850116.1 
NP_850117.1 


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