[←][→] ath   AT2G32950 Gene
functional annotation
Function   Transducin/WD40 repeat-like superfamily protein  
GO BP
GO:0009647 [list] [network] skotomorphogenesis  (5 genes)  TAS  
GO:0009649 [list] [network] entrainment of circadian clock  (15 genes)  IMP  
GO:0009641 [list] [network] shade avoidance  (17 genes)  IMP  
GO:0046283 [list] [network] anthocyanin-containing compound metabolic process  (24 genes)  IMP  
GO:0009585 [list] [network] red, far-red light phototransduction  (54 genes)  IEA  
GO:0048573 [list] [network] photoperiodism, flowering  (67 genes)  IMP  
GO:0009640 [list] [network] photomorphogenesis  (71 genes)  IGI TAS  
GO:0010119 [list] [network] regulation of stomatal movement  (88 genes)  IGI IMP  
GO:0006281 [list] [network] DNA repair  (295 genes)  IMP  
GO:0016567 [list] [network] protein ubiquitination  (624 genes)  IEA  
GO CC
GO:0000152 [list] [network] nuclear ubiquitin ligase complex  (20 genes)  TAS  
GO:0016604 [list] [network] nuclear body  (115 genes)  IDA  
GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex  (130 genes)  ISS  
GO:0005634 [list] [network] nucleus  (10793 genes)  IDA IMP ISM  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IEA  
GO MF
GO:0061630 [list] [network] ubiquitin protein ligase activity  (204 genes)  IDA  
GO:0042802 [list] [network] identical protein binding  (288 genes)  IPI  
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (434 genes)  IDA IMP  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath04120 [list] [network] Ubiquitin mediated proteolysis (143 genes)
ath04712 [list] [network] Circadian rhythm - plant (36 genes)
Protein NP_001325309.1  NP_180854.1 
BLAST NP_001325309.1  NP_180854.1 
Orthologous [Ortholog page] COP1 (sly)  LOC4330868 (osa)  LOC7468530 (ppo)  LOC11420758 (mtr)  LOC100246063 (vvi)  LOC100248310 (vvi)  LOC100279342 (zma)  LOC100286122 (zma)  LOC100788171 (gma)  LOC100813745 (gma)  LOC101249698 (sly)  LOC103867588 (bra) 
Subcellular
localization
wolf
nucl 9,  chlo 1  (predict for NP_001325309.1)
nucl 9  (predict for NP_180854.1)
Subcellular
localization
TargetP
other 6,  mito 4  (predict for NP_001325309.1)
other 9  (predict for NP_180854.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 2
Genes directly connected with COP1 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.9 AT1G18660 zinc finger (C3HC4-type RING finger) family protein [detail] 838447
7.5 SPA4 SPA1-related 4 [detail] 841743
7.3 SCAB1 plectin-like protein [detail] 817218
7.3 AT3G12010 C18orf8 [detail] 820375
6.7 AT3G08505 zinc finger (CCCH-type/C3HC4-type RING finger) family protein [detail] 819998
5.4 BEL10 BEL1-like homeodomain 10 [detail] 838558
5.0 AT2G24420 DNA repair ATPase-like protein [detail] 816978
4.7 AT5G13360 Auxin-responsive GH3 family protein [detail] 831177
4.6 AT1G31440 SH3 domain-containing protein [detail] 840034
Coexpressed
gene list		 [Coexpressed gene list for COP1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
267640_at
267640_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
267640_at
267640_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
267640_at
267640_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 817857      
Refseq ID (protein) NP_001325309.1 
NP_180854.1 


The preparation time of this page was 0.2 [sec].