[←][→] ath   At2g32950 Gene
functional annotation
Function   Transducin/WD40 repeat-like superfamily protein      
GO BP
GO:0009647 [list] [network] skotomorphogenesis  (5 genes)  TAS  
GO:0009649 [list] [network] entrainment of circadian clock  (12 genes)  IMP  
GO:0009963 [list] [network] positive regulation of flavonoid biosynthetic process  (12 genes)  IMP  
GO:0009641 [list] [network] shade avoidance  (17 genes)  IMP  
GO:0046283 [list] [network] anthocyanin-containing compound metabolic process  (41 genes)  IMP  
GO:0010224 [list] [network] response to UV-B  (75 genes)  IMP  
GO:0009640 [list] [network] photomorphogenesis  (80 genes)  IGI TAS  
GO:0048573 [list] [network] photoperiodism, flowering  (94 genes)  IMP  
GO:0010119 [list] [network] regulation of stomatal movement  (105 genes)  IGI IMP  
GO:0006281 [list] [network] DNA repair  (203 genes)  IMP  
GO:0016567 [list] [network] protein ubiquitination  (434 genes)  IEA  
GO CC
GO:0000152 [list] [network] nuclear ubiquitin ligase complex  (12 genes)  TAS  
GO:0016604 [list] [network] nuclear body  (86 genes)  IDA  
GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex  (121 genes)  ISS  
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA IMP ISM  
GO MF
GO:0061630 [list] [network] ubiquitin protein ligase activity  (78 genes)  IDA IEA  
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (261 genes)  IDA IMP  
GO:0042802 [list] [network] identical protein binding  (404 genes)  IPI  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath04120 [list] [network] Ubiquitin mediated proteolysis (155 genes)
ath04712 [list] [network] Circadian rhythm - plant (39 genes)
Protein NP_001325309.1  NP_180854.1 
BLAST NP_001325309.1  NP_180854.1 
Orthologous [Ortholog page] COP1 (sly)  LOC4330868 (osa)  LOC7468530 (ppo)  LOC11420758 (mtr)  LOC18097291 (ppo)  LOC100788171 (gma)  LOC100813745 (gma)  LOC101249698 (sly)  LOC103867588 (bra)  LOC123138400 (tae)  LOC123145654 (tae)  LOC123402650 (hvu) 
Subcellular
localization
wolf
nucl 9,  chlo 1  (predict for NP_001325309.1)
nucl 9  (predict for NP_180854.1)
Subcellular
localization
TargetP
other 6,  mito 4  (predict for NP_001325309.1)
other 9  (predict for NP_180854.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 2
Genes directly connected with COP1 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
10.0 AT1G18660 zinc finger (C3HC4-type RING finger) family protein [detail] 838447
7.4 SPA4 SPA1-related 4 [detail] 841743
7.2 SCAB1 plectin-like protein [detail] 817218
6.3 AT3G12010 C18orf8 [detail] 820375
5.7 HRB1 Drought-responsive family protein [detail] 834983
5.7 AT1G31440 SH3 domain-containing protein [detail] 840034
5.5 AT5G08430 SWIB/MDM2 and Plus-3 and GYF domain-containing protein [detail] 830742
5.5 BEL10 BEL1-like homeodomain 10 [detail] 838558
5.4 ATSK12 Protein kinase superfamily protein [detail] 819753
Coexpressed
gene list		 [Coexpressed gene list for COP1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
267640_at
267640_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
267640_at
267640_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
267640_at
267640_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 817857      
Refseq ID (protein) NP_001325309.1 
NP_180854.1 


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