[←][→] ath   AT2G41980 Gene
functional annotation
Function   Protein with RING/U-box and TRAF-like domain  
GO BP
GO:2000785 [list] [network] regulation of autophagosome assembly  (4 genes)  IMP  
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (436 genes)  IEA  
GO:0016567 [list] [network] protein ubiquitination  (624 genes)  IDA IEA IPI  
GO:0007275 [list] [network] multicellular organism development  (2714 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10793 genes)  IEA ISM  
GO MF
GO:0008270 [list] [network] zinc ion binding  (554 genes)  IEA  
GO:0016740 [list] [network] transferase activity  (3833 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath04120 [list] [network] Ubiquitin mediated proteolysis (143 genes)
Protein NP_181729.1 
BLAST NP_181729.1 
Orthologous [Ortholog page] SINAT2 (ath)  LOC4328179 (osa)  LOC4344172 (osa)  LOC7455750 (ppo)  LOC7462783 (ppo)  LOC7463600 (ppo)  LOC7479519 (ppo)  LOC7484028 (ppo)  LOC9266295 (osa)  LOC11418493 (mtr)  LOC11418807 (mtr)  LOC11444084 (mtr)  LOC25483549 (mtr)  LOC100170243 (zma)  LOC100170244 (zma)  LOC100170245 (zma)  LOC100233085 (vvi)  LOC100244678 (vvi)  LOC100267231 (vvi)  LOC100500061 (gma)  LOC100793457 (gma)  LOC100813966 (gma)  LOC101260503 (sly)  LOC101263446 (sly)  LOC103830135 (bra)  LOC103841701 (bra)  LOC103858006 (bra)  LOC103865920 (bra) 
Subcellular
localization
wolf
nucl 4,  cyto 3,  chlo 2,  extr 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_181729.1)
Subcellular
localization
TargetP
other 8  (predict for NP_181729.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 4
Genes directly connected with AT2G41980 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
5.5 AT1G03560 Pentatricopeptide repeat (PPR-like) superfamily protein [detail] 839458
4.9 APC3 Mitochondrial substrate carrier family protein [detail] 830623
4.8 SINAT2 seven in absentia of Arabidopsis 2 [detail] 824973
Coexpressed
gene list		 [Coexpressed gene list for AT2G41980]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
267581_at
267581_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
267581_at
267581_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
267581_at
267581_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 818798      
Refseq ID (protein) NP_181729.1 


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