[←][→] ath   At2g42270 Gene
functional annotation
Function   U5 small nuclear ribonucleoprotein helicase    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO CC
GO:0009506 [list] [network] plasmodesma  (871 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2559 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
KEGG ath03040 [list] [network] Spliceosome (203 genes)
Protein NP_181756.1 
BLAST NP_181756.1 
Orthologous [Ortholog page] emb1507 (ath)  LOC4328024 (osa)  LOC7454552 (ppo)  LOC7463125 (ppo)  LOC11423909 (mtr)  LOC25491349 (mtr)  LOC100780515 (gma)  LOC100816176 (gma)  LOC101254105 (sly)  LOC101255504 (sly)  LOC103829399 (bra)  LOC103834351 (bra)  LOC103851964 (bra)  LOC107276130 (osa)  LOC123131673 (tae)  LOC123135471 (tae)  LOC123143060 (tae)  LOC123161029 (tae)  LOC123401531 (hvu)  LOC123410607 (hvu) 
Subcellular
localization
wolf
cyto 9,  nucl 1,  plas 1,  nucl_plas 1  (predict for NP_181756.1)
Subcellular
localization
TargetP
other 5,  mito 5  (predict for NP_181756.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
Genes directly connected with AT2G42270 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.1 AT2G42330 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein [detail] 818834
8.0 AT2G39580 zinc finger C3H1 domain protein [detail] 818543
7.9 AT1G21580 Zinc finger C-x8-C-x5-C-x3-H type family protein [detail] 838759
6.2 WRKY19 protein kinase family protein [detail] 826810
5.8 AT1G33415 [detail] 5007749
5.1 AT4G16680 P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 827370
4.1 AT1G50820 aminotransferase-like, mobile domain protein [detail] 841504
Coexpressed
gene list		 [Coexpressed gene list for AT2G42270]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
267627_at
267627_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
267627_at
267627_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
267627_at
267627_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 818828      
Refseq ID (protein) NP_181756.1 


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