ATTED-II : GeneID search result

[←][→] ath At3g07610 Gene

functional annotation

Function

Transcription factor jumonji (jmjC) domain-containing protein

GO BP

GO:0033169 [list] [network] histone H3-K9 demethylation	(8 genes)	IGI IMP
GO:0032776 [list] [network] DNA methylation on cytosine	(18 genes)	IGI IMP
GO:0010440 [list] [network] stomatal lineage progression	(22 genes)	IMP
GO:0080188 [list] [network] gene silencing by RNA-directed DNA methylation	(38 genes)	IMP
GO:0040029 [list] [network] epigenetic regulation of gene expression	(146 genes)	IMP
GO:0009555 [list] [network] pollen development	(376 genes)	IMP
GO:0048366 [list] [network] leaf development	(465 genes)	IMP
GO:0009908 [list] [network] flower development	(492 genes)	IMP
GO:0010468 [list] [network] regulation of gene expression	(2177 genes)	IMP

GO CC

GO:0005634 [list] [network] nucleus

(10305 genes)

ISM

GO MF

GO:0032454 [list] [network] histone H3K9 demethylase activity	(4 genes)	IDA IMP ISS
GO:0031490 [list] [network] chromatin DNA binding	(21 genes)	IDA

KEGG

Protein

NP_001078121.1 NP_001189838.1 NP_187418.1

BLAST

NP_001078121.1 NP_001189838.1 NP_187418.1

Orthologous

[Ortholog page] AT4G00990 (ath) AT1G11950 (ath) AT1G62310 (ath) LOC4328036 (osa) LOC4331234 (osa) LOC4333174 (osa) LOC4346966 (osa) LOC7475185 (ppo) LOC7477121 (ppo) LOC7484535 (ppo) LOC7486369 (ppo) LOC11429788 (mtr) LOC11431621 (mtr) LOC11433685 (mtr) LOC11440103 (mtr) LOC11443736 (mtr) LOC11444490 (mtr) LOC11445522 (mtr) LOC18097336 (ppo) LOC25484213 (mtr) LOC25486220 (mtr) LOC25486224 (mtr) LOC25499741 (mtr) LOC100780803 (gma) LOC100797799 (gma) LOC100797860 (gma) LOC100798824 (gma) LOC100800662 (gma) LOC100801772 (gma) LOC100805723 (gma) LOC100806419 (gma) LOC101252668 (sly) LOC101254269 (sly) LOC101260929 (sly) LOC101265193 (sly) LOC102663284 (gma) LOC103836196 (bra) LOC103836863 (bra) LOC103838408 (bra) LOC103848169 (bra) LOC103858823 (bra) LOC103870649 (bra) LOC106794176 (gma) LOC106794317 (gma) LOC107278851 (osa) LOC112323367 (ppo) LOC112997634 (gma) LOC123039062 (tae) LOC123066751 (tae) LOC123088655 (tae) LOC123103666 (tae) LOC123111890 (tae) LOC123121446 (tae) LOC123135497 (tae) LOC123143072 (tae) LOC123180586 (tae) LOC123395900 (hvu) LOC123397138 (hvu)

Subcellular
localization
wolf

nucl 7, cyto_nucl 5, cyto 2	(predict for NP_001078121.1)
nucl 7, cyto 2	(predict for NP_001189838.1)
nucl 8, cyto 1	(predict for NP_187418.1)

Subcellular
localization
TargetP

other 8	(predict for NP_001078121.1)
other 8	(predict for NP_001189838.1)
other 8	(predict for NP_187418.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3
ath03015	mRNA surveillance pathway	2

Genes directly connected with IBM1 on the network
coex z^*	Locus	Function^*	CoexViewer	Entrez Gene ID^*
6.3	SMC5	structural maintenance of chromosomes 5	[detail]	831449
5.6	SYN4	sister chromatid cohesion 1 protein 4	[detail]	831487
5.5	GTA2	global transcription factor group A2	[detail]	826391

Coexpressed
gene list

[Coexpressed gene list for IBM1]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

259252_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

259252_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

259252_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	819952
Refseq ID (protein)	NP_001078121.1
	NP_001189838.1
	NP_187418.1

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