[←][→] ath   AT3G10230 Gene
functional annotation
Function   lycopene cyclase  
GO BP
GO:0016120 [list] [network] carotene biosynthetic process  (7 genes)  IBA IGI  
GO:0016123 [list] [network] xanthophyll biosynthetic process  (8 genes)  IBA  
GO:0006744 [list] [network] ubiquinone biosynthetic process  (19 genes)  IBA  
GO:0016117 [list] [network] carotenoid biosynthetic process  (34 genes)  IDA  
GO CC
GO:0009507 [list] [network] chloroplast  (5095 genes)  IEA ISM TAS  
GO MF
GO:0045436 [list] [network] lycopene beta cyclase activity  (1 genes)  IBA IDA IGI  
GO:0016705 [list] [network] oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen  (346 genes)  IEA  
GO:0016491 [list] [network] oxidoreductase activity  (1435 genes)  IBA  
KEGG ath00906 [list] [network] Carotenoid biosynthesis (29 genes)
Protein NP_001078131.1  NP_187634.1 
BLAST NP_001078131.1  NP_187634.1 
Orthologous [Ortholog page] LCY1 (sly)  LOC4328572 (osa)  LOC7496096 (ppo)  LOC11419142 (mtr)  LOC100252133 (vvi)  LOC100383002 (zma)  LOC100783830 (gma)  LOC100810895 (gma)  LOC101267662 (sly)  LOC103870482 (bra) 
Subcellular
localization
wolf
cyto 3,  cysk 3,  chlo 1,  nucl 1,  cyto_pero 1  (predict for NP_001078131.1)
cyto 5,  nucl 2,  chlo 1,  mito 1,  cysk 1,  golg 1,  chlo_mito 1  (predict for NP_187634.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001078131.1)
other 8  (predict for NP_187634.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00906 Carotenoid biosynthesis 2
Genes directly connected with LYC on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
6.4 AT3G21390 Mitochondrial substrate carrier family protein [detail] 821693
6.3 ftsh9 FTSH protease 9 [detail] 836004
6.3 AT1G32160 beta-casein (DUF760) [detail] 840108
Coexpressed
gene list		 [Coexpressed gene list for LYC]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
259140_at
259140_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
259140_at
259140_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
259140_at
259140_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 820185      
Refseq ID (protein) NP_001078131.1 
NP_187634.1 


The preparation time of this page was 0.2 [sec].