[←][→] ath   AT3G11910 Gene
functional annotation
Function   ubiquitin-specific protease 13  
GO BP
GO:0009867 [list] [network] jasmonic acid mediated signaling pathway  (71 genes)  IMP  
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (436 genes)  IEA  
GO CC
GO:0009506 [list] [network] plasmodesma  (962 genes)  IDA  
GO:0005829 [list] [network] cytosol  (3506 genes)  HDA IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IPI ISM  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IPI  
GO MF
GO:0004843 [list] [network] thiol-dependent ubiquitin-specific protease activity  (42 genes)  IDA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG
Protein NP_001189864.1  NP_001319526.1  NP_001326292.1  NP_187797.3 
BLAST NP_001189864.1  NP_001319526.1  NP_001326292.1  NP_187797.3 
Orthologous [Ortholog page] UBP12 (ath)  LOC4324616 (osa)  LOC4342469 (osa)  LOC4352242 (osa)  LOC7455616 (ppo)  LOC7469919 (ppo)  LOC7486860 (ppo)  LOC7491593 (ppo)  LOC9270404 (osa)  LOC11418867 (mtr)  LOC11432874 (mtr)  LOC11443023 (mtr)  LOC100193936 (zma)  LOC100194235 (zma)  LOC100244518 (vvi)  LOC100252573 (vvi)  LOC100266796 (vvi)  LOC100337655 (gma)  LOC100381748 (zma)  LOC100383306 (zma)  LOC100383827 (zma)  LOC100778442 (gma)  LOC100781560 (gma)  LOC100800328 (gma)  LOC100810922 (gma)  LOC101248777 (sly)  LOC101255649 (sly)  LOC101257631 (sly)  LOC101266987 (sly)  LOC103651156 (zma)  LOC103845922 (bra)  LOC103847000 (bra)  LOC103850626 (bra)  LOC103855679 (bra)  LOC103859415 (bra)  LOC103870300 (bra) 
Subcellular
localization
wolf
cyto 6,  nucl 4  (predict for NP_001189864.1)
cyto 6,  nucl 4  (predict for NP_001319526.1)
cyto 6,  nucl 4  (predict for NP_001326292.1)
cyto 6,  nucl 4  (predict for NP_187797.3)
Subcellular
localization
TargetP
other 8  (predict for NP_001189864.1)
other 8  (predict for NP_001319526.1)
other 8  (predict for NP_001326292.1)
other 8  (predict for NP_187797.3)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
ath04120 Ubiquitin mediated proteolysis 2
Genes directly connected with UBP13 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
11.7 AT5G47690 binding protein [detail] 834820
9.5 TTN8 Structural maintenance of chromosomes (SMC) family protein [detail] 824632
9.2 UBP12 ubiquitin-specific protease 12 [detail] 830548
7.9 XRN4 exoribonuclease 4 [detail] 841891
7.9 CUL1 cullin 1 [detail] 825648
5.6 AT1G05120 Helicase protein with RING/U-box domain-containing protein [detail] 839319
Coexpressed
gene list		 [Coexpressed gene list for UBP13]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
258780_at
258780_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
258780_at
258780_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
258780_at
258780_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 820364      
Refseq ID (protein) NP_001189864.1 
NP_001319526.1 
NP_001326292.1 
NP_187797.3 


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