[][] ath   AT3G16950 Gene
functional annotation
Function   lipoamide dehydrogenase 1
GO BP
GO:0006086 [list] [network] acetyl-CoA biosynthetic process from pyruvate  (8 genes)  TAS  
GO:0046685 [list] [network] response to arsenic-containing substance  (14 genes)  IMP  
GO:0045454 [list] [network] cell redox homeostasis  (142 genes)  IEA  
GO:0055114 [list] [network] oxidation-reduction process  (1468 genes)  IEA  
GO CC
GO:0005730 [list] [network] nucleolus  (477 genes)  IDA  
GO:0009941 [list] [network] chloroplast envelope  (666 genes)  IDA  
GO:0009570 [list] [network] chloroplast stroma  (750 genes)  IDA  
GO:0005829 [list] [network] cytosol  (3506 genes)  HDA RCA  
GO:0009507 [list] [network] chloroplast  (5095 genes)  ISM  
GO MF
GO:0004148 [list] [network] dihydrolipoyl dehydrogenase activity  (4 genes)  ISS  
GO:0050660 [list] [network] flavin adenine dinucleotide binding  (147 genes)  IEA  
KEGG ath00010 [list] [network] Glycolysis / Gluconeogenesis (116 genes)
ath00020 [list] [network] Citrate cycle (TCA cycle) (63 genes)
ath00260 [list] [network] Glycine, serine and threonine metabolism (70 genes)
ath00280 [list] [network] Valine, leucine and isoleucine degradation (51 genes)
ath00310 [list] [network] Lysine degradation (38 genes)
ath00380 [list] [network] Tryptophan metabolism (60 genes)
ath00620 [list] [network] Pyruvate metabolism (86 genes)
ath00630 [list] [network] Glyoxylate and dicarboxylate metabolism (78 genes)
ath00640 [list] [network] Propanoate metabolism (43 genes)
ath01200 [list] [network] Carbon metabolism (273 genes)
Protein NP_001078165.1  NP_566562.1 
BLAST NP_001078165.1  NP_566562.1 
Orthologous [Ortholog page] AT4G16155 (ath)LOC4326849 (osa)LOC4337862 (osa)LOC7485915 (ppo)LOC11408806 (mtr)LOC11422305 (mtr)LOC100246616 (vvi)LOC100251123 (vvi)LOC100381818 (zma)LOC100383599 (zma)LOC100782004 (gma)LOC100803176 (gma)LOC100809578 (gma)LOC101245293 (sly)LOC101246429 (sly)LOC103859689 (bra)LOC103870046 (bra)
Subcellular
localization
wolf
chlo 9  (predict for NP_001078165.1)
chlo 10  (predict for NP_566562.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_001078165.1)
chlo 9  (predict for NP_566562.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00620 Pyruvate metabolism 9
ath01200 Carbon metabolism 9
ath00010 Glycolysis / Gluconeogenesis 7
ath00020 Citrate cycle (TCA cycle) 5
ath00061 Fatty acid biosynthesis 5
Genes directly connected with LPD1 on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
16.5 PKP-BETA1 plastidic pyruvate kinase beta subunit 1 [detail] 835369
13.9 MOD1 NAD(P)-binding Rossmann-fold superfamily protein [detail] 815152
12.9 LTA2 2-oxoacid dehydrogenases acyltransferase family protein [detail] 822181
12.5 PDH-E1 ALPHA pyruvate dehydrogenase E1 alpha [detail] 839429
12.2 AT3G56130 biotin/lipoyl attachment domain-containing protein [detail] 824779
11.6 CAC3 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit [detail] 818382
11.5 ACP1 acyl carrier protein 1 [detail] 819664
11.1 PKP-ALPHA Pyruvate kinase family protein [detail] 821870
11.0 AT2G34590 Transketolase family protein [detail] 818024
10.5 EMB3141 Pentatricopeptide repeat (PPR-like) superfamily protein [detail] 835107
10.3 AT5G08415 Radical SAM superfamily protein [detail] 830740
9.6 RUS6 root UVB sensitive protein (Protein of unknown function, DUF647) [detail] 835045
7.0 DWF1 cell elongation protein / DWARF1 / DIMINUTO (DIM) [detail] 821519
6.0 AT1G20480 AMP-dependent synthetase and ligase family protein [detail] 838636
5.5 AT4G13050 Acyl-ACP thioesterase [detail] 826919
5.0 AT4G09160 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [detail] 826497
4.1 AT2G17650 AMP-dependent synthetase and ligase family protein [detail] 816272
Coexpressed
gene list
[Coexpressed gene list for LPD1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
257895_at
257895_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
257895_at
257895_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
257895_at
257895_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 820951    
Refseq ID (protein) NP_001078165.1 
NP_566562.1 


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