[←][→] ath   At3g23940 Gene
functional annotation
Function   dehydratase family    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0009082 [list] [network] branched-chain amino acid biosynthetic process  (22 genes)  IMP  
GO:0009553 [list] [network] embryo sac development  (163 genes)  IMP  
GO:0009555 [list] [network] pollen development  (376 genes)  IMP  
GO:0009651 [list] [network] response to salt stress  (607 genes)  IMP  
GO:0048364 [list] [network] root development  (1192 genes)  IMP  
GO CC
GO:0009570 [list] [network] chloroplast stroma  (705 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2559 genes)  RCA  
GO:0009507 [list] [network] chloroplast  (5004 genes)  HDA ISM  
GO:0009536 [list] [network] plastid  (5425 genes)  HDA  
GO MF
GO:0016836 [list] [network] hydro-lyase activity  (68 genes)  TAS  
GO:0005507 [list] [network] copper ion binding  (132 genes)  HDA  
KEGG ath00290 [list] [network] Valine, leucine and isoleucine biosynthesis (21 genes)
ath00770 [list] [network] Pantothenate and CoA biosynthesis (34 genes)
ath01210 [list] [network] 2-Oxocarboxylic acid metabolism (74 genes)
ath01230 [list] [network] Biosynthesis of amino acids (244 genes)
Protein NP_001189959.1  NP_189036.1 
BLAST NP_001189959.1  NP_189036.1 
Orthologous [Ortholog page] LOC4346318 (osa)  LOC7460521 (ppo)  LOC7478279 (ppo)  LOC11422645 (mtr)  LOC100806689 (gma)  LOC101246533 (sly)  LOC101264707 (sly)  LOC103828655 (bra)  LOC103831845 (bra)  LOC123153596 (tae)  LOC123157147 (tae)  LOC123165567 (tae)  LOC123407417 (hvu) 
Subcellular
localization
wolf
chlo 7,  chlo_mito 5,  mito 1  (predict for NP_001189959.1)
chlo 8,  chlo_mito 5,  mito 1  (predict for NP_189036.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_001189959.1)
chlo 8  (predict for NP_189036.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 15
ath00300 Lysine biosynthesis 6
ath00290 Valine, leucine and isoleucine biosynthesis 5
ath00230 Purine metabolism 4
ath01210 2-Oxocarboxylic acid metabolism 4
Genes directly connected with AT3G23940 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
10.9 AT3G14390 Pyridoxal-dependent decarboxylase family protein [detail] 820660
10.2 AT2G35040 AICARFT/IMPCHase bienzyme family protein [detail] 818069
9.4 AT-HF HIS HF [detail] 828797
8.7 AT5G10920 L-Aspartase-like family protein [detail] 830959
Coexpressed
gene list		 [Coexpressed gene list for AT3G23940]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
256862_at
256862_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
256862_at
256862_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
256862_at
256862_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 821977      
Refseq ID (protein) NP_001189959.1 
NP_189036.1 


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