[←][→] ath   AT3G23940 Gene
functional annotation
Function   dehydratase family  
GO BP
GO:0009099 [list] [network] valine biosynthetic process  (9 genes)  IEA  
GO:0009097 [list] [network] isoleucine biosynthetic process  (13 genes)  IEA  
GO:0009082 [list] [network] branched-chain amino acid biosynthetic process  (25 genes)  IBA IMP  
GO:0009553 [list] [network] embryo sac development  (146 genes)  IMP  
GO:0009555 [list] [network] pollen development  (337 genes)  IMP  
GO:0048364 [list] [network] root development  (482 genes)  IMP  
GO:0009651 [list] [network] response to salt stress  (485 genes)  IMP  
GO CC
GO:0009570 [list] [network] chloroplast stroma  (750 genes)  IBA IDA  
GO:0005829 [list] [network] cytosol  (3506 genes)  RCA  
GO:0009507 [list] [network] chloroplast  (5095 genes)  HDA IDA ISM  
GO:0009536 [list] [network] plastid  (5519 genes)  IDA  
GO MF
GO:0004160 [list] [network] dihydroxy-acid dehydratase activity  (1 genes)  IBA  
GO:0016836 [list] [network] hydro-lyase activity  (81 genes)  TAS  
GO:0051539 [list] [network] 4 iron, 4 sulfur cluster binding  (81 genes)  IEA  
GO:0005507 [list] [network] copper ion binding  (185 genes)  IDA  
KEGG ath00290 [list] [network] Valine, leucine and isoleucine biosynthesis (22 genes)
ath00770 [list] [network] Pantothenate and CoA biosynthesis (28 genes)
ath01210 [list] [network] 2-Oxocarboxylic acid metabolism (74 genes)
ath01230 [list] [network] Biosynthesis of amino acids (251 genes)
Protein NP_001189959.1  NP_189036.1 
BLAST NP_001189959.1  NP_189036.1 
Orthologous [Ortholog page] LOC4346318 (osa)  LOC7460521 (ppo)  LOC7478279 (ppo)  LOC11422645 (mtr)  LOC100242520 (vvi)  LOC100273676 (zma)  LOC100384514 (zma)  LOC100806689 (gma)  LOC101246533 (sly)  LOC101264707 (sly)  LOC103828655 (bra)  LOC103831845 (bra) 
Subcellular
localization
wolf
chlo 7,  chlo_mito 5,  mito 1  (predict for NP_001189959.1)
chlo 8,  chlo_mito 5,  mito 1  (predict for NP_189036.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_001189959.1)
chlo 8  (predict for NP_189036.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 11
ath00300 Lysine biosynthesis 4
ath01210 2-Oxocarboxylic acid metabolism 4
ath00290 Valine, leucine and isoleucine biosynthesis 4
ath00250 Alanine, aspartate and glutamate metabolism 4
Genes directly connected with AT3G23940 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
9.2 AT3G14390 Pyridoxal-dependent decarboxylase family protein [detail] 820660
8.8 AT2G35040 AICARFT/IMPCHase bienzyme family protein [detail] 818069
8.8 AT3G58610 ketol-acid reductoisomerase [detail] 825030
7.9 AT5G10920 L-Aspartase-like family protein [detail] 830959
Coexpressed
gene list		 [Coexpressed gene list for AT3G23940]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
256862_at
256862_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
256862_at
256862_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
256862_at
256862_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 821977      
Refseq ID (protein) NP_001189959.1 
NP_189036.1 


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