[←][→] ath   AT3G42670 Gene
functional annotation
Function   chromatin remodeling 38  
GO BP
GO:1900370 [list] [network] positive regulation of RNA interference  (6 genes)  IMP  
GO:0031047 [list] [network] gene silencing by RNA  (183 genes)  IMP  
GO CC
GO:0005654 [list] [network] nucleoplasm  (444 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (477 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0004386 [list] [network] helicase activity  (157 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2003 genes)  IEA  
KEGG ath03440 [list] [network] Homologous recombination (67 genes)
Protein NP_001327910.1  NP_001327911.1  NP_001327912.1  NP_189853.1 
BLAST NP_001327910.1  NP_001327911.1  NP_001327912.1  NP_189853.1 
Orthologous [Ortholog page] CHR42 (ath)  LOC4344376 (osa)  LOC7462098 (ppo)  LOC11408204 (mtr)  LOC11435042 (mtr)  LOC11441869 (mtr)  LOC25484660 (mtr)  LOC100250037 (vvi)  LOC100781856 (gma)  LOC100785036 (gma)  LOC100811703 (gma)  LOC101262122 (sly)  LOC103633601 (zma)  LOC103834007 (bra)  LOC103845677 (bra) 
Subcellular
localization
wolf
nucl 5,  cyto 1,  mito 1,  pero 1,  cyto_pero 1  (predict for NP_001327910.1)
nucl 5,  cyto 1,  mito 1,  pero 1,  cyto_pero 1  (predict for NP_001327911.1)
nucl 5,  cyto 1,  mito 1,  pero 1,  cyto_pero 1  (predict for NP_001327912.1)
nucl 5,  cyto 1,  mito 1,  pero 1,  cyto_pero 1  (predict for NP_189853.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001327910.1)
other 7  (predict for NP_001327911.1)
other 7  (predict for NP_001327912.1)
other 7  (predict for NP_189853.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00220 Arginine biosynthesis 2
ath00250 Alanine, aspartate and glutamate metabolism 2
ath00910 Nitrogen metabolism 2
Genes directly connected with CHR38 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
5.6 DCL3 dicer-like 3 [detail] 823508
5.6 NRPD1A nuclear RNA polymerase D1A [detail] 842605
5.1 MIPS3 myo-inositol-1-phosphate synthase 3 [detail] 830881
4.1 AT1G49475 AP2/B3-like transcriptional factor family protein [detail] 841371
Coexpressed
gene list		 [Coexpressed gene list for CHR38]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
252786_at
252786_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
252786_at
252786_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
252786_at
252786_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 823287      
Refseq ID (protein) NP_001327910.1 
NP_001327911.1 
NP_001327912.1 
NP_189853.1 


The preparation time of this page was 0.2 [sec].