ATTED-II : GeneID search result

[←][→] ath AT3G46060 Gene

functional annotation

Function

RAB GTPase homolog 8A

GO BP

GO:0017157 [list] [network] regulation of exocytosis	(9 genes)	IBA
GO:0006904 [list] [network] vesicle docking involved in exocytosis	(16 genes)	IBA
GO:0009306 [list] [network] protein secretion	(16 genes)	IBA
GO:0032482 [list] [network] Rab protein signal transduction	(57 genes)	IBA
GO:0009873 [list] [network] ethylene-activated signaling pathway	(191 genes)	IEP
GO:0006886 [list] [network] intracellular protein transport	(516 genes)	IBA

GO CC

GO:0000139 [list] [network] Golgi membrane	(404 genes)	IEA
GO:0005774 [list] [network] vacuolar membrane	(624 genes)	IDA
GO:0005773 [list] [network] vacuole	(1133 genes)	IDA
GO:0005829 [list] [network] cytosol	(3506 genes)	HDA
GO:0005886 [list] [network] plasma membrane	(3771 genes)	IBA IDA

GO MF

GO:0003924 [list] [network] GTPase activity	(169 genes)	IBA
GO:0005525 [list] [network] GTP binding	(248 genes)	ISS
GO:0005515 [list] [network] protein binding	(4605 genes)	IPI

KEGG

ath04144 [list] [network] Endocytosis (144 genes)

Protein

NP_001078248.1 NP_001118780.1 NP_190192.1

BLAST

NP_001078248.1 NP_001118780.1 NP_190192.1

Orthologous

[Ortholog page] ER43 (sly) ypt2 (sly) RABE1e (ath) RAB8 (ath) RAB8C (ath) AT5G59840 (ath) LOC4334590 (osa) LOC4339021 (osa) LOC4342644 (osa) LOC4342802 (osa) LOC7488135 (ppo) LOC11412245 (mtr) LOC11420796 (mtr) LOC11425056 (mtr) LOC11432353 (mtr) LOC25485703 (mtr) LOC100192989 (zma) LOC100243217 (vvi) LOC100252992 (vvi) LOC100257177 (vvi) LOC100263639 (vvi) LOC100272423 (zma) LOC100273222 (zma) LOC100273382 (zma) LOC100499844 (gma) LOC100502497 (zma) LOC100775804 (gma) LOC100779203 (gma) LOC100780673 (gma) LOC100782753 (gma) LOC100786439 (gma) LOC100800345 (gma) LOC100816795 (gma) LOC101250995 (sly) LOC101264577 (sly) LOC101267153 (sly) LOC103632090 (zma) LOC103635765 (zma) LOC103639686 (zma) LOC103829943 (bra) LOC103841286 (bra) LOC103845404 (bra) LOC103855520 (bra) LOC103863391 (bra) BRAB-1 (bra) LOC103873604 (bra) LOC103873612 (bra)

Subcellular
localization
wolf

cyto 5, chlo 2, mito 1, nucl 1, extr 1, cyto_mito 1, mito_plas 1	(predict for NP_001078248.1)
cyto 5, chlo 2, mito 1, nucl 1, extr 1, cyto_mito 1, mito_plas 1	(predict for NP_001118780.1)
cyto 5, chlo 2, mito 1, nucl 1, extr 1, cyto_mito 1, mito_plas 1	(predict for NP_190192.1)

Subcellular
localization
TargetP

other 5, scret 4, mito 3	(predict for NP_001078248.1)
other 5, scret 4, mito 3	(predict for NP_001118780.1)
other 5, scret 4, mito 3	(predict for NP_190192.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	4

Genes directly connected with RABE1c on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
8.9	RAB8	RAB GTPase homolog 8	[detail]	824529
8.1	RAB6A	Ras-related small GTP-binding family protein	[detail]	819069
7.7	AT5G59840	Ras-related small GTP-binding family protein	[detail]	836105
7.3	AT4G12230	alpha/beta-Hydrolases superfamily protein	[detail]	826831
6.4	ABCI18	non-intrinsic ABC protein 4	[detail]	839378
5.6	TON1B	tonneau 1b (TON1b)	[detail]	824666
5.6	AT5G01800	saposin B domain-containing protein	[detail]	831924
4.8	AT1G65220	ARM repeat superfamily protein	[detail]	842829

Coexpressed
gene list

[Coexpressed gene list for RABE1c]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

252514_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

252514_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

252514_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	823749
Refseq ID (protein)	NP_001078248.1
	NP_001118780.1
	NP_190192.1

The preparation time of this page was 0.2 [sec].