[←][→] ath   At3g49580 Gene
functional annotation
Function   response to low sulfur 1    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0010438 [list] [network] cellular response to sulfur starvation  (12 genes)  IEP  
GO:0098869 [list] [network] cellular oxidant detoxification  (24 genes)  IEA  
GO:0009651 [list] [network] response to salt stress  (607 genes)  IEP  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG
Protein NP_001190042.1  NP_001327932.1  NP_190527.1 
BLAST NP_001190042.1  NP_001327932.1  NP_190527.1 
Orthologous [Ortholog page] LSU3 (ath)  LSU4 (ath)  LSU2 (ath)  LOC4328185 (osa)  LOC4349083 (osa)  LOC7464483 (ppo)  LOC7486705 (ppo)  LOC9269286 (osa)  LOC11424580 (mtr)  LOC100804573 (gma)  LOC100813653 (gma)  LOC100820369 (gma)  LOC101243684 (sly)  LOC101243970 (sly)  LOC101259547 (sly)  LOC101268660 (sly)  LOC103854791 (bra)  LOC103873047 (bra)  LOC103873048 (bra)  LOC103874333 (bra)  LOC123048673 (tae)  LOC123056943 (tae)  LOC123124800 (tae)  LOC123130260 (tae)  LOC123133695 (tae)  LOC123138931 (tae)  LOC123141067 (tae)  LOC123168116 (tae)  LOC123402564 (hvu)  LOC123434448 (hvu) 
Subcellular
localization
wolf
chlo 6,  nucl 2,  cyto 1,  plas 1,  pero 1,  cyto_pero 1,  cyto_plas 1  (predict for NP_001190042.1)
chlo 6,  cyto 4  (predict for NP_001327932.1)
chlo 8,  nucl 1,  plas 1,  pero 1,  nucl_plas 1  (predict for NP_190527.1)
Subcellular
localization
TargetP
other 6  (predict for NP_001190042.1)
other 7  (predict for NP_001327932.1)
other 7  (predict for NP_190527.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00270 Cysteine and methionine metabolism 2
ath01200 Carbon metabolism 2
ath01230 Biosynthesis of amino acids 2
ath00260 Glycine, serine and threonine metabolism 2
ath00460 Cyanoamino acid metabolism 2
Genes directly connected with LSU1 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
21.1 ATSDI1 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 834943
19.2 LSU3 response to low sulfur 3 [detail] 824119
15.4 LSU2 response to low sulfur 2 [detail] 832538
12.7 AT5G26220 ChaC-like family protein [detail] 832691
10.0 PYD4 PYRIMIDINE 4 [detail] 820034
9.8 BGLU28 beta glucosidase 28 [detail] 819053
7.5 SULTR1;2 sulfate transporter 1;2 [detail] 844135
7.0 AT1G12030 phosphoenolpyruvate carboxylase, putative (DUF506) [detail] 837755
6.1 LSU4 response to low sulfur 4 [detail] 832537
5.6 SR1 serine/threonine protein kinase 1 [detail] 831765
5.2 BCA3 beta carbonic anhydrase 3 [detail] 838983
Coexpressed
gene list		 [Coexpressed gene list for LSU1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
252269_at
252269_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
252269_at
252269_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
252269_at
252269_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 824120      
Refseq ID (protein) NP_001190042.1 
NP_001327932.1 
NP_190527.1 


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