[←][→] ath   AT3G53190 Gene
functional annotation
Function   Pectin lyase-like superfamily protein  
GO BP
GO:0045490 [list] [network] pectin catabolic process  (96 genes)  IEA  
GO CC
GO:0031225 [list] [network] anchored component of membrane  (303 genes)  TAS  
GO:0005576 [list] [network] extracellular region  (3363 genes)  ISM  
GO MF
GO:0030570 [list] [network] pectate lyase activity  (24 genes)  IEA  
GO:0016829 [list] [network] lyase activity  (412 genes)  ISS  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
KEGG ath00040 [list] [network] Pentose and glucuronate interconversions (96 genes)
Protein NP_566979.1 
BLAST NP_566979.1 
Orthologous [Ortholog page] LOC25483947 (mtr)  LOC25499338 (mtr)  LOC100267540 (vvi)  LOC100775595 (gma)  LOC100815062 (gma)  LOC101257697 (sly)  LOC103841243 (bra)  LOC103850282 (bra) 
Subcellular
localization
wolf
plas 5,  golg_plas 4,  golg 2,  E.R. 1  (predict for NP_566979.1)
Subcellular
localization
TargetP
scret 9  (predict for NP_566979.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00040 Pentose and glucuronate interconversions 2
Genes directly connected with AT3G53190 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
9.5 AT2G25270 transmembrane protein [detail] 817065
9.2 ATLP-1 Pathogenesis-related thaumatin superfamily protein [detail] 838405
8.0 AT4G38660 Pathogenesis-related thaumatin superfamily protein [detail] 830022
7.5 CYCD3;1 CYCLIN D3;1 [detail] 829564
6.4 TRN2 Tetraspanin family protein [detail] 834713
6.3 EXPA6 expansin A6 [detail] 817444
6.2 GH9B1 glycosyl hydrolase 9B1 [detail] 843408
Coexpressed
gene list		 [Coexpressed gene list for AT3G53190]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
251982_at
251982_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
251982_at
251982_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
251982_at
251982_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 824485      
Refseq ID (protein) NP_566979.1 


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