ATTED-II : GeneID search result

[←][→] ath At3g56590 Gene

functional annotation

Function

hydroxyproline-rich glycoprotein family protein

GO BP

GO:0042546 [list] [network] cell wall biogenesis	(399 genes)	IEA
GO:0071669 [list] [network] plant-type cell wall organization or biogenesis	(489 genes)	IEA

GO CC

GO:0005634 [list] [network] nucleus

(10305 genes)

ISM

GO MF

KEGG

Protein

NP_001118848.1 NP_191218.2

BLAST

NP_001118848.1 NP_191218.2

Orthologous

[Ortholog page] AT3G10810 (ath) LOC4326504 (osa) LOC4338601 (osa) LOC7464054 (ppo) LOC7479638 (ppo) LOC11413293 (mtr) LOC100786981 (gma) LOC100792490 (gma) LOC100818532 (gma) LOC100819068 (gma) LOC101250645 (sly) LOC101260385 (sly) LOC103841561 (bra) LOC103847296 (bra) LOC103863097 (bra) LOC123053721 (tae) LOC123063373 (tae) LOC123072350 (tae) LOC123080593 (tae) LOC123130197 (tae) LOC123181814 (tae) LOC123440276 (hvu) LOC123445416 (hvu)

Subcellular
localization
wolf

plas 4, nucl 2, E.R. 2, golg_plas 2	(predict for NP_001118848.1)
nucl 6, golg 1, chlo 1, cyto 1, vacu 1, E.R. 1, golg_plas 1, E.R._vacu 1, cyto_E.R. 1	(predict for NP_191218.2)

Subcellular
localization
TargetP

other 9	(predict for NP_001118848.1)
other 9	(predict for NP_191218.2)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with AT3G56590 on the network
coex z^*	Locus	Function^*	CoexViewer	Entrez Gene ID^*
12.1	AT3G10810	zinc finger (C3HC4-type RING finger) family protein	[detail]	820250
6.2	AT3G24480	Leucine-rich repeat (LRR) family protein	[detail]	822038
6.1	AT2G28240	ATP-dependent helicase family protein	[detail]	817370
5.9	AT5G56890	Protein kinase superfamily protein	[detail]	835791
5.1	AT1G35510	O-fucosyltransferase family protein	[detail]	840444
4.4	AT3G01860	uncharacterized protein	[detail]	820070

Coexpressed
gene list

[Coexpressed gene list for AT3G56590]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

251695_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

251695_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

251695_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	824826
Refseq ID (protein)	NP_001118848.1
Refseq ID (protein)	NP_191218.2

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