[←][→] ath   At3g58040 Gene
functional annotation
Function   uncharacterized protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:2000785 [list] [network] regulation of autophagosome assembly  (4 genes)  IMP  
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (230 genes)  IEA  
GO:0016567 [list] [network] protein ubiquitination  (434 genes)  IDA IEA IPI  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath04120 [list] [network] Ubiquitin mediated proteolysis (155 genes)
Protein NP_001326739.1  NP_001326740.1  NP_191363.1 
BLAST NP_001326739.1  NP_001326740.1  NP_191363.1 
Orthologous [Ortholog page] AT2G41980 (ath)  AT3G61790 (ath)  AT4G27880 (ath)  AT5G53360 (ath)  LOC4327774 (osa)  LOC4329066 (osa)  LOC4338181 (osa)  LOC7455750 (ppo)  LOC7457400 (ppo)  LOC7463600 (ppo)  LOC7475187 (ppo)  LOC7479519 (ppo)  LOC7484028 (ppo)  LOC7486772 (ppo)  LOC7496400 (ppo)  LOC11418493 (mtr)  LOC11423170 (mtr)  LOC11446457 (mtr)  LOC25483549 (mtr)  LOC25499735 (mtr)  LOC25500674 (mtr)  LOC100500061 (gma)  LOC100782764 (gma)  LOC100792687 (gma)  LOC100810573 (gma)  LOC100813966 (gma)  LOC101246723 (sly)  LOC101253831 (sly)  SlSINA5 (sly)  SINA4 (sly)  SlSINA1 (sly)  LOC101264159 (sly)  LOC103830135 (bra)  LOC103830327 (bra)  LOC103834788 (bra)  LOC103841701 (bra)  LOC103858006 (bra)  LOC103862812 (bra)  LOC103863005 (bra)  LOC103865920 (bra)  LOC103867677 (bra)  LOC123060825 (tae)  LOC123069400 (tae)  LOC123077898 (tae)  LOC123147734 (tae)  LOC123157150 (tae)  LOC123165457 (tae)  LOC123180859 (tae)  LOC123407757 (hvu)  LOC123428647 (hvu)  LOC123443282 (hvu) 
Subcellular
localization
wolf
cyto 4,  chlo 2,  cyto_pero 2,  cyto_plas 2  (predict for NP_001326739.1)
chlo 6,  cyto 3  (predict for NP_001326740.1)
cyto 4,  chlo 2,  cyto_pero 2,  cyto_plas 2  (predict for NP_191363.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001326739.1)
other 9  (predict for NP_001326740.1)
other 9  (predict for NP_191363.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 2
ath03015 mRNA surveillance pathway 2
Genes directly connected with SINAT2 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.2 AT2G22720 SPT2 chromatin protein [detail] 816802
6.2 ETO1 tetratricopeptide repeat (TPR)-containing protein [detail] 824340
6.1 AT3G58030 RING/U-box superfamily protein [detail] 824972
5.1 AT2G41980 Protein with RING/U-box and TRAF-like domain [detail] 818798
5.0 AT5G24320 Transducin/WD40 repeat-like superfamily protein [detail] 832502
Coexpressed
gene list		 [Coexpressed gene list for SINAT2]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
251589_at
251589_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
251589_at
251589_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
251589_at
251589_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 824973      
Refseq ID (protein) NP_001326739.1 
NP_001326740.1 
NP_191363.1 


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