[←][→] ath   At4g02840 Gene
functional annotation
Function   Small nuclear ribonucleoprotein family protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0043484 [list] [network] regulation of RNA splicing  (21 genes)  IMP  
GO:0035194 [list] [network] RNA-mediated post-transcriptional gene silencing  (92 genes)  IMP  
GO:0008380 [list] [network] RNA splicing  (191 genes)  IMP  
GO CC
GO:0016607 [list] [network] nuclear speck  (50 genes)  IDA  
GO:0005730 [list] [network] nucleolus  (387 genes)  HDA IDA  
GO:0000325 [list] [network] plant-type vacuole  (785 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2559 genes)  RCA  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1535 genes)  IDA  
KEGG ath03040 [list] [network] Spliceosome (203 genes)
Protein NP_001190664.1  NP_192193.1 
BLAST NP_001190664.1  NP_192193.1 
Orthologous [Ortholog page] AT3G07590 (ath)  LOC4329810 (osa)  LOC4336118 (osa)  LOC7480704 (ppo)  LOC11420807 (mtr)  LOC25499104 (mtr)  LOC100792809 (gma)  LOC100793721 (gma)  LOC100819089 (gma)  LOC101248611 (sly)  LOC101251485 (sly)  LOC103849211 (bra)  LOC103858735 (bra)  LOC103859234 (bra)  LOC103870651 (bra)  LOC123045720 (tae)  LOC123053594 (tae)  LOC123127567 (tae)  LOC123137209 (tae)  LOC123144642 (tae)  LOC123189490 (tae)  LOC123405972 (hvu)  LOC123426973 (hvu) 
Subcellular
localization
wolf
cyto 6,  nucl 1,  mito 1,  chlo 1,  golg 1,  cyto_mito 1,  cysk_nucl 1,  nucl_plas 1,  mito_plas 1  (predict for NP_001190664.1)
cyto 5,  nucl 1,  mito 1,  chlo 1,  E.R. 1,  golg 1,  cyto_mito 1,  cysk_nucl 1,  nucl_plas 1,  mito_plas 1  (predict for NP_192193.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001190664.1)
other 7  (predict for NP_192193.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 8
ath03010 Ribosome 7
ath03018 RNA degradation 4
Genes directly connected with AT4G02840 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
9.0 LSM2 Small nuclear ribonucleoprotein family protein [detail] 839526
8.9 AT1G20580 Small nuclear ribonucleoprotein family protein [detail] 838647
7.9 AT3G53740 Ribosomal protein L36e family protein [detail] 824541
Coexpressed
gene list		 [Coexpressed gene list for AT4G02840]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
255458_at
255458_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
255458_at
255458_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
255458_at
255458_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 828163      
Refseq ID (protein) NP_001190664.1 
NP_192193.1 


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