[←][→] ath   AT4G02840 Gene
functional annotation
Function   Small nuclear ribonucleoprotein family protein  
GO BP
GO:0043484 [list] [network] regulation of RNA splicing  (40 genes)  IMP  
GO:0035194 [list] [network] posttranscriptional gene silencing by RNA  (130 genes)  IMP  
GO:0008380 [list] [network] RNA splicing  (272 genes)  IMP  
GO CC
GO:0016607 [list] [network] nuclear speck  (86 genes)  IDA  
GO:0005730 [list] [network] nucleolus  (477 genes)  IDA  
GO:0005774 [list] [network] vacuolar membrane  (624 genes)  IDA  
GO:0005829 [list] [network] cytosol  (3506 genes)  RCA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1026 genes)  IDA  
KEGG ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_001190664.1  NP_192193.1 
BLAST NP_001190664.1  NP_192193.1 
Orthologous
Subcellular
localization
wolf
cyto 6,  nucl 1,  mito 1,  chlo 1,  golg 1,  cyto_mito 1,  cysk_nucl 1,  nucl_plas 1,  mito_plas 1  (predict for NP_001190664.1)
cyto 5,  nucl 1,  mito 1,  chlo 1,  E.R. 1,  golg 1,  cyto_mito 1,  cysk_nucl 1,  nucl_plas 1,  mito_plas 1  (predict for NP_192193.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001190664.1)
other 7  (predict for NP_192193.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 10
ath03040 Spliceosome 8
ath03018 RNA degradation 3
Genes directly connected with AT4G02840 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.1 AT1G20580 Small nuclear ribonucleoprotein family protein [detail] 838647
7.8 LSM2 Small nuclear ribonucleoprotein family protein [detail] 839526
6.9 AT4G27090 Ribosomal protein L14 [detail] 828817
5.9 AT2G31140 Peptidase S24/S26A/S26B/S26C family protein [detail] 817670
Coexpressed
gene list		 [Coexpressed gene list for AT4G02840]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
255458_at
255458_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
255458_at
255458_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
255458_at
255458_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 828163      
Refseq ID (protein) NP_001190664.1 
NP_192193.1 


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