[←][→] ath   AT4G08920 Gene
functional annotation
Function   cryptochrome 1  
GO BP
GO:0071000 [list] [network] response to magnetism  (1 genes)  IDA IMP  
GO:0010343 [list] [network] singlet oxygen-mediated programmed cell death  (3 genes)  IMP  
GO:0010617 [list] [network] circadian regulation of calcium ion oscillation  (3 genes)  IMP  
GO:1901529 [list] [network] positive regulation of anion channel activity  (3 genes)  IMP  
GO:1902448 [list] [network] positive regulation of shade avoidance  (4 genes)  IMP  
GO:0072387 [list] [network] flavin adenine dinucleotide metabolic process  (6 genes)  IDA IMP  
GO:1901672 [list] [network] positive regulation of systemic acquired resistance  (6 genes)  IMP  
GO:1901332 [list] [network] negative regulation of lateral root development  (7 genes)  IMP  
GO:1902347 [list] [network] response to strigolactone  (7 genes)  IMP  
GO:0010244 [list] [network] response to low fluence blue light stimulus by blue low-fluence system  (9 genes)  IEP IMP  
GO:0010117 [list] [network] photoprotection  (10 genes)  IMP  
GO:0010310 [list] [network] regulation of hydrogen peroxide metabolic process  (15 genes)  IDA  
GO:1901371 [list] [network] regulation of leaf morphogenesis  (20 genes)  IMP  
GO:0009785 [list] [network] blue light signaling pathway  (21 genes)  TAS  
GO:1900426 [list] [network] positive regulation of defense response to bacterium  (22 genes)  IMP  
GO:0009638 [list] [network] phototropism  (24 genes)  IMP  
GO:0046283 [list] [network] anthocyanin-containing compound metabolic process  (24 genes)  IMP  
GO:2000652 [list] [network] regulation of secondary cell wall biogenesis  (28 genes)  IDA  
GO:0018298 [list] [network] protein-chromophore linkage  (38 genes)  IEA  
GO:0009646 [list] [network] response to absence of light  (45 genes)  IMP  
GO:0010075 [list] [network] regulation of meristem growth  (54 genes)  IGI  
GO:0010218 [list] [network] response to far red light  (54 genes)  IMP  
GO:2000377 [list] [network] regulation of reactive oxygen species metabolic process  (54 genes)  IDA  
GO:0009583 [list] [network] detection of light stimulus  (55 genes)  IMP  
GO:0042752 [list] [network] regulation of circadian rhythm  (57 genes)  IMP  
GO:0010118 [list] [network] stomatal movement  (59 genes)  IGI IMP  
GO:0009644 [list] [network] response to high light intensity  (65 genes)  IMP  
GO:0051510 [list] [network] regulation of unidimensional cell growth  (69 genes)  IMP  
GO:0009640 [list] [network] photomorphogenesis  (71 genes)  IMP  
GO:0010114 [list] [network] response to red light  (74 genes)  IMP  
GO:0060918 [list] [network] auxin transport  (75 genes)  IMP  
GO:0009637 [list] [network] response to blue light  (98 genes)  IDA IMP NAS  
GO:0007623 [list] [network] circadian rhythm  (111 genes)  IEP NAS  
GO:0046777 [list] [network] protein autophosphorylation  (173 genes)  IDA  
GO:0009414 [list] [network] response to water deprivation  (361 genes)  IGI  
GO:0009416 [list] [network] response to light stimulus  (700 genes)  IDA IEP  
GO:0099402 [list] [network] plant organ development  (981 genes)  IMP  
GO:0006952 [list] [network] defense response  (1420 genes)  IEA  
GO:0055114 [list] [network] oxidation-reduction process  (1468 genes)  IMP  
GO CC
GO:0016605 [list] [network] PML body  (5 genes)  IEA  
GO:0016604 [list] [network] nuclear body  (115 genes)  IDA  
GO:0005829 [list] [network] cytosol  (3506 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IDA ISM  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IDA  
GO MF
GO:0009882 [list] [network] blue light photoreceptor activity  (5 genes)  IDA IMP  
GO:0071949 [list] [network] FAD binding  (68 genes)  IDA  
GO:0042803 [list] [network] protein homodimerization activity  (158 genes)  IPI  
GO:0042802 [list] [network] identical protein binding  (288 genes)  IPI  
GO:0004672 [list] [network] protein kinase activity  (1017 genes)  IDA  
GO:0016301 [list] [network] kinase activity  (1362 genes)  IDA  
GO:0005524 [list] [network] ATP binding  (2003 genes)  IDA  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath04712 [list] [network] Circadian rhythm - plant (36 genes)
Protein NP_567341.1 
BLAST NP_567341.1 
Orthologous [Ortholog page] Cry1b (sly)  CRY1a (sly)  LOC4329738 (osa)  LOC4336008 (osa)  LOC7486597 (ppo)  LOC7495156 (ppo)  LOC11428875 (mtr)  LOC100194126 (zma)  CRY1a (gma)  LOC100254022 (vvi)  LOC100384475 (zma)  LOC100502533 (zma)  LOC100786551 (gma)  LOC100797839 (gma)  LOC100815428 (gma)  CRY1 (bra) 
Subcellular
localization
wolf
chlo 5,  mito 1,  vacu 1,  nucl 1,  plas 1,  extr 1,  cyto_mito 1,  nucl_plas 1,  E.R._vacu 1  (predict for NP_567341.1)
Subcellular
localization
TargetP
other 5,  chlo 3  (predict for NP_567341.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 2
ath00860 Porphyrin and chlorophyll metabolism 2
ath00900 Terpenoid backbone biosynthesis 2
ath00592 alpha-Linolenic acid metabolism 2
ath04712 Circadian rhythm - plant 2
Genes directly connected with CRY1 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
6.3 CLA1 Deoxyxylulose-5-phosphate synthase [detail] 827230
6.0 SDP1 Patatin-like phospholipase family protein [detail] 830283
5.9 AT5G13950 nuclear factor kappa-B-binding protein [detail] 831243
5.8 AT3G13062 Polyketide cyclase/dehydrase and lipid transport superfamily protein [detail] 820493
5.5 CRY2 cryptochrome 2 [detail] 839529
4.8 RR12 response regulator 12 [detail] 817056
Coexpressed
gene list		 [Coexpressed gene list for CRY1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
255068_at
255068_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
255068_at
255068_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
255068_at
255068_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 826470      
Refseq ID (protein) NP_567341.1 


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