ATTED-II : GeneID search result

[←][→] ath AT4G12740 Gene

functional annotation

Function

HhH-GPD base excision DNA repair family protein

GO BP

GO:0006298 [list] [network] mismatch repair	(14 genes)	IBA
GO:0006284 [list] [network] base-excision repair	(25 genes)	IBA
GO:0006281 [list] [network] DNA repair	(295 genes)	IBA

GO CC

GO:0005634 [list] [network] nucleus

(10793 genes)

IBA ISM

GO MF

GO:0000701 [list] [network] purine-specific mismatch base pair DNA N-glycosylase activity	(1 genes)	IBA
GO:0035485 [list] [network] adenine/guanine mispair binding	(1 genes)	IBA
GO:0034039 [list] [network] 8-oxo-7,8-dihydroguanine DNA N-glycosylase activity	(2 genes)	IBA
GO:0032357 [list] [network] oxidized purine DNA binding	(7 genes)	IBA

KEGG

ath03410 [list] [network] Base excision repair (43 genes)

Protein

NP_001329634.1 NP_001329635.1 NP_193010.2

BLAST

NP_001329634.1 NP_001329635.1 NP_193010.2

Orthologous

[Ortholog page] LOC4351781 (osa) LOC7456032 (ppo) LOC9269803 (osa) LOC25500763 (mtr) LOC100265491 (vvi) LOC100284112 (zma) LOC100818278 (gma) LOC101262147 (sly) LOC102669741 (gma) LOC103849063 (bra)

Subcellular
localization
wolf

chlo 6, vacu 1, nucl 1, cyto 1, mito 1, plas 1, cyto_nucl 1, nucl_plas 1, E.R._vacu 1, mito_plas 1, cyto_plas 1	(predict for NP_001329634.1)
chlo 9, chlo_mito 5	(predict for NP_001329635.1)
chlo 6, vacu 1, nucl 1, cyto 1, plas 1, cyto_nucl 1, nucl_plas 1, E.R._vacu 1, cyto_plas 1	(predict for NP_193010.2)

Subcellular
localization
TargetP

chlo 7	(predict for NP_001329634.1)
chlo 7	(predict for NP_001329635.1)
chlo 7	(predict for NP_193010.2)

Gene coexpression

Network^*for
coexpressed
genes

Coexpressed
gene list

[Coexpressed gene list for AT4G12740]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

254808_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

254808_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

254808_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	826886
Refseq ID (protein)	NP_001329634.1
	NP_001329635.1
	NP_193010.2

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