ATTED-II : GeneID search result

[←][→] ath AT4G20030 Gene

functional annotation

Function

RNA-binding (RRM/RBD/RNP motifs) family protein

GO BP

GO:0000381 [list] [network] regulation of alternative mRNA splicing, via spliceosome	(30 genes)	IBA
GO:0045292 [list] [network] mRNA cis splicing, via spliceosome	(38 genes)	IBA

GO CC

GO:0016607 [list] [network] nuclear speck	(86 genes)	IBA
GO:0009507 [list] [network] chloroplast	(5095 genes)	ISM
GO:0005634 [list] [network] nucleus	(10793 genes)	IBA IDA

GO MF

GO:0003723 [list] [network] RNA binding

(1790 genes)

IBA

KEGG

Protein

NP_567594.1

BLAST

NP_567594.1

Orthologous

[Ortholog page] LOC7471615 (ppo) LOC11433950 (mtr) LOC100254274 (vvi) LOC100305971 (gma) LOC100802603 (gma) LOC100855197 (vvi) LOC101264588 (sly) LOC103857919 (bra)

Subcellular
localization
wolf

chlo 7, mito 3

(predict for NP_567594.1)

Subcellular
localization
TargetP

chlo 8

(predict for NP_567594.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	2

Genes directly connected with AT4G20030 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
5.8	AT1G28150	hypothetical protein	[detail]	839709
4.5	AT5G08540	ribosomal RNA small subunit methyltransferase J	[detail]	830754
4.4	ER	enhancer of rudimentary protein	[detail]	830948

Coexpressed
gene list

[Coexpressed gene list for AT4G20030]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

254504_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

254504_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

254504_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	827748
Refseq ID (protein)	NP_567594.1

The preparation time of this page was 0.1 [sec].