[←][→] ath   At4g20440 Gene
functional annotation
Function   small nuclear ribonucleoprotein associated protein B      
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (105 genes)  TAS  
GO CC
GO:0015030 [list] [network] Cajal body  (12 genes)  IDA  
GO:0005654 [list] [network] nucleoplasm  (253 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
KEGG ath03040 [list] [network] Spliceosome (203 genes)
Protein NP_001031682.1  NP_001154258.1  NP_001329619.1  NP_193777.1  NP_849414.1 
BLAST NP_001031682.1  NP_001154258.1  NP_001329619.1  NP_193777.1  NP_849414.1 
Orthologous [Ortholog page] AT5G44500 (ath)  LOC9270807 (osa)  LOC11431976 (mtr)  LOC18095770 (ppo)  LOC25501710 (mtr)  LOC100780500 (gma)  LOC100786807 (gma)  LOC101262959 (sly)  LOC103834168 (bra)  LOC103858296 (bra)  LOC123045027 (tae)  LOC123052809 (tae)  LOC123188677 (tae)  LOC123426167 (hvu) 
Subcellular
localization
wolf
chlo 4,  nucl 4,  cyto 1,  mito 1,  plas 1,  extr 1,  mito_plas 1,  cyto_plas 1  (predict for NP_001031682.1)
chlo 4,  nucl 4,  cyto 1,  mito 1,  plas 1,  extr 1,  mito_plas 1,  cyto_plas 1  (predict for NP_001154258.1)
chlo 4,  nucl 4,  cyto 1,  mito 1,  plas 1,  extr 1,  mito_plas 1,  cyto_plas 1  (predict for NP_001329619.1)
chlo 4,  nucl 4,  cyto 1,  mito 1,  plas 1,  extr 1,  mito_plas 1,  cyto_plas 1  (predict for NP_193777.1)
chlo 4,  nucl 4,  cyto 1,  mito 1,  plas 1,  extr 1,  mito_plas 1,  cyto_plas 1  (predict for NP_849414.1)
Subcellular
localization
TargetP
mito 4  (predict for NP_001031682.1)
mito 4  (predict for NP_001154258.1)
mito 4  (predict for NP_001329619.1)
mito 4  (predict for NP_193777.1)
mito 4  (predict for NP_849414.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 6
ath03040 Spliceosome 5
ath03013 Nucleocytoplasmic transport 5
Genes directly connected with smB on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
10.4 SR45 arginine/serine-rich 45 [detail] 838230
10.1 AT1G07930 GTP binding Elongation factor Tu family protein [detail] 837308
9.9 ATARCA Transducin/WD40 repeat-like superfamily protein [detail] 838388
9.2 RIP1 cobalt ion binding protein [detail] 820729
8.4 RSZ22 serine/arginine-rich 22 [detail] 829285
7.8 AT5G44500 Small nuclear ribonucleoprotein family protein [detail] 834477
Coexpressed
gene list		 [Coexpressed gene list for smB]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
254475_at
254475_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
254475_at
254475_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
254475_at
254475_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 827792      
Refseq ID (protein) NP_001031682.1 
NP_001154258.1 
NP_001329619.1 
NP_193777.1 
NP_849414.1 


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