[←][→] ath   AT4G39100 Gene
functional annotation
Function   PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein  
GO BP
GO:0035067 [list] [network] negative regulation of histone acetylation  (6 genes)  IMP  
GO:2000028 [list] [network] regulation of photoperiodism, flowering  (63 genes)  IMP  
GO:0010228 [list] [network] vegetative to reproductive phase transition of meristem  (173 genes)  IMP  
GO:0006325 [list] [network] chromatin organization  (338 genes)  IMP  
GO:0009908 [list] [network] flower development  (447 genes)  IEA  
GO:0009791 [list] [network] post-embryonic development  (1519 genes)  IMP  
GO:0006355 [list] [network] regulation of transcription, DNA-templated  (1984 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10793 genes)  IDA ISM  
GO MF
GO:0035064 [list] [network] methylated histone binding  (14 genes)  IDA  
GO:0003682 [list] [network] chromatin binding  (126 genes)  IEA  
GO:0000976 [list] [network] transcription regulatory region sequence-specific DNA binding  (204 genes)  IDA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1599 genes)  ISS  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG
Protein NP_001190959.1  NP_568053.1 
BLAST NP_001190959.1  NP_568053.1 
Orthologous [Ortholog page] EBS (ath)  LOC4334444 (osa)  LOC4342595 (osa)  LOC4345596 (osa)  LOC4346950 (osa)  LOC7484543 (ppo)  LOC11422794 (mtr)  LOC25487270 (mtr)  LOC100193016 (zma)  LOC100217096 (zma)  LOC100252013 (vvi)  LOC100253455 (vvi)  LOC100284042 (zma)  LOC100285536 (zma)  LOC100286231 (zma)  LOC100526926 (gma)  LOC100778353 (gma)  LOC100787968 (gma)  LOC100800806 (gma)  LOC100800993 (gma)  LOC100810424 (gma)  LOC100854261 (vvi)  LOC101247139 (sly)  LOC101253288 (sly)  LOC101264075 (sly)  LOC103834239 (bra)  LOC103835144 (bra)  LOC103859811 (bra)  LOC103861289 (bra) 
Subcellular
localization
wolf
nucl 9,  mito 1,  extr 1  (predict for NP_001190959.1)
nucl 8,  mito 1,  plas 1,  extr 1,  mito_plas 1  (predict for NP_568053.1)
Subcellular
localization
TargetP
mito 3,  other 3  (predict for NP_001190959.1)
mito 3,  other 3  (predict for NP_568053.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
Genes directly connected with SHL1 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
5.1 ACHT4 atypical CYS HIS rich thioredoxin 4 [detail] 837379
5.1 AT1G21780 BTB/POZ domain-containing protein [detail] 838782
5.0 AT2G15695 peptide methionine sulfoxide reductase (Protein of unknown function DUF829, transmembrane 53) [detail] 816063
4.9 AT5G58800 Quinone reductase family protein [detail] 835997
Coexpressed
gene list		 [Coexpressed gene list for SHL1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
252925_at
252925_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
252925_at
252925_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
252925_at
252925_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 830065      
Refseq ID (protein) NP_001190959.1 
NP_568053.1 


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