[←][→] ath   AT4G39540 Gene
functional annotation
Function   shikimate kinase 2  
GO BP
GO:0019632 [list] [network] shikimate metabolic process  (6 genes)  IDA  
GO:0009423 [list] [network] chorismate biosynthetic process  (10 genes)  IEA  
GO:0009073 [list] [network] aromatic amino acid family biosynthetic process  (59 genes)  TAS  
GO:0016310 [list] [network] phosphorylation  (1279 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (5095 genes)  IEA ISM TAS  
GO MF
GO:0004765 [list] [network] shikimate kinase activity  (4 genes)  IDA  
GO:0005524 [list] [network] ATP binding  (2003 genes)  IEA  
KEGG ath00400 [list] [network] Phenylalanine, tyrosine and tryptophan biosynthesis (56 genes)
ath01230 [list] [network] Biosynthesis of amino acids (251 genes)
Protein NP_001190969.1  NP_195664.2  NP_974715.1 
BLAST NP_001190969.1  NP_195664.2  NP_974715.1 
Orthologous [Ortholog page] SK (sly)  SK1 (ath)  LOC4330732 (osa)  LOC4337165 (osa)  LOC4340547 (osa)  LOC7468745 (ppo)  LOC7486337 (ppo)  LOC100191326 (zma)  LOC100244261 (vvi)  LOC100262762 (vvi)  LOC100283304 (zma)  LOC100286040 (zma)  LOC100784290 (gma)  LOC100784736 (gma)  LOC100797982 (gma)  LOC100807736 (gma)  LOC102667853 (gma)  LOC103850170 (bra)  LOC103864307 (bra) 
Subcellular
localization
wolf
nucl 6,  nucl_plas 4,  chlo 1,  plas 1,  pero 1,  cysk 1,  chlo_mito 1  (predict for NP_001190969.1)
nucl 6,  nucl_plas 4,  chlo 1,  plas 1,  extr 1,  cysk 1,  chlo_mito 1  (predict for NP_195664.2)
nucl 6,  nucl_plas 4,  chlo 1,  plas 1,  extr 1,  cysk 1,  chlo_mito 1  (predict for NP_974715.1)
Subcellular
localization
TargetP
other 5,  chlo 4  (predict for NP_001190969.1)
other 4,  chlo 3  (predict for NP_195664.2)
other 4,  chlo 3  (predict for NP_974715.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 5
ath00260 Glycine, serine and threonine metabolism 3
ath01210 2-Oxocarboxylic acid metabolism 3
ath00230 Purine metabolism 2
ath00500 Starch and sucrose metabolism 2
Genes directly connected with SK2 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
6.3 AK-LYS1 aspartate kinase 1 [detail] 831169
6.2 SOS4 pfkB-like carbohydrate kinase family protein [detail] 833763
6.2 AT2G45990 ribosomal RNA small subunit methyltransferase G [detail] 819207
Coexpressed
gene list		 [Coexpressed gene list for SK2]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
252900_at
252900_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
252900_at
252900_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
252900_at
252900_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 830108      
Refseq ID (protein) NP_001190969.1 
NP_195664.2 
NP_974715.1 


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