[←][→] ath   At5g03740 Gene
functional annotation
Function   histone deacetylase 2C      
GO BP
GO:0045892 [list] [network] negative regulation of DNA-templated transcription  (205 genes)  IDA  
GO:0009409 [list] [network] response to cold  (472 genes)  IEP  
GO:0009651 [list] [network] response to salt stress  (607 genes)  IMP  
GO:0009414 [list] [network] response to water deprivation  (1006 genes)  IMP  
GO:0009737 [list] [network] response to abscisic acid  (1086 genes)  IEP  
GO CC
GO:0005730 [list] [network] nucleolus  (387 genes)  HDA IDA  
GO:0005886 [list] [network] plasma membrane  (2529 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
GO:0004407 [list] [network] histone deacetylase activity  (16 genes)  ISS  
GO:0000976 [list] [network] transcription cis-regulatory region binding  (708 genes)  IPI  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG
Protein NP_195994.3 
BLAST NP_195994.3 
Orthologous [Ortholog page] HD2A (gma)  LOC780626 (tae)  HDT4 (ath)  HDA3 (ath)  HD2B (ath)  LOC4339823 (osa)  LOC7474933 (ppo)  LOC11434112 (mtr)  LOC11434564 (mtr)  LOC18097993 (ppo)  LOC18100075 (ppo)  LOC25487509 (mtr)  HDT6 (gma)  LOC100792094 (gma)  HDT4 (gma)  HDT2 (gma)  HDT1 (gma)  LOC101244607 (sly)  HDT3 (sly)  LOC101262270 (sly)  LOC103845525 (bra)  LOC103847362 (bra)  LOC103851455 (bra)  LOC103851458 (bra)  LOC103851750 (bra)  LOC103851751 (bra)  LOC103856522 (bra)  LOC103864807 (bra)  LOC107277645 (osa)  LOC112416804 (mtr)  LOC123050863 (tae)  LOC123066145 (tae)  LOC123071217 (tae)  LOC123075202 (tae)  LOC123161746 (tae)  LOC123183440 (tae)  LOC123408500 (hvu)  LOC123445159 (hvu)  LOC123452961 (hvu) 
Subcellular
localization
wolf
nucl 10  (predict for NP_195994.3)
Subcellular
localization
TargetP
other 8  (predict for NP_195994.3)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath04141 Protein processing in endoplasmic reticulum 2
Genes directly connected with HD2C on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
8.9 BOB1 HSP20-like chaperones superfamily protein [detail] 835421
8.0 TPR10 ankyrin repeat family protein [detail] 819629
7.3 SC35 serine/arginine-rich splicing factor-like protein, putative [detail] 836541
Coexpressed
gene list		 [Coexpressed gene list for HD2C]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
250912_at
250912_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
250912_at
250912_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
250912_at
250912_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 831733      
Refseq ID (protein) NP_195994.3 


The preparation time of this page was 0.1 [sec].