[←][→] ath   AT5G09880 Gene
functional annotation
Function   Splicing factor, CC1-like protein  
GO BP
GO:0006397 [list] [network] mRNA processing  (376 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10793 genes)  IEA ISM  
GO MF
KEGG
Protein NP_568220.1 
BLAST NP_568220.1 
Orthologous [Ortholog page] AT2G16940 (ath)  LOC7453655 (ppo)  LOC7476432 (ppo)  LOC9269341 (osa)  LOC9270364 (osa)  LOC11423679 (mtr)  LOC11426905 (mtr)  LOC100243992 (vvi)  LOC100253813 (vvi)  LOC100274411 (zma)  LOC100278875 (zma)  LOC100383130 (zma)  LOC100789839 (gma)  LOC100793461 (gma)  LOC100795336 (gma)  LOC100802446 (gma)  LOC100818613 (gma)  LOC101259103 (sly)  LOC103846010 (bra)  LOC103846856 (bra)  LOC103850353 (bra)  LOC112417170 (mtr) 
Subcellular
localization
wolf
nucl 10  (predict for NP_568220.1)
Subcellular
localization
TargetP
other 9  (predict for NP_568220.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 8
Genes directly connected with AT5G09880 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
11.0 ATU2AF65A U2 snRNP auxilliary factor, large subunit, splicing factor [detail] 829822
9.2 PRP40B pre-mRNA-processing protein 40B [detail] 821504
9.1 AT4G36980 CLK4-associating serine/arginine-rich protein [detail] 829852
8.6 AT2G16940 Splicing factor, CC1-like protein [detail] 816197
8.0 AT5G17440 LUC7 related protein [detail] 831610
7.8 UNE6 LUC7 related protein [detail] 821276
7.6 AT1G13350 Protein kinase superfamily protein [detail] 837895
Coexpressed
gene list		 [Coexpressed gene list for AT5G09880]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
250457_at
250457_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
250457_at
250457_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
250457_at
250457_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 830848      
Refseq ID (protein) NP_568220.1 


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