[←][→] ath   At5g12210 Gene
functional annotation
Function   RAB geranylgeranyl transferase beta subunit 1      
GO BP
GO:0018344 [list] [network] protein geranylgeranylation  (5 genes)  IDA  
GO:0140301 [list] [network] pollen-stigma interaction  (6 genes)  IMP  
GO:0010315 [list] [network] auxin export across the plasma membrane  (11 genes)  IMP  
GO:0010252 [list] [network] auxin homeostasis  (35 genes)  IMP  
GO:0009960 [list] [network] endosperm development  (37 genes)  IMP  
GO:0010183 [list] [network] pollen tube guidance  (49 genes)  IMP  
GO:0010214 [list] [network] seed coat development  (54 genes)  IMP  
GO:0009553 [list] [network] embryo sac development  (163 genes)  IMP  
GO:0009555 [list] [network] pollen development  (376 genes)  IMP  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (697 genes)  IMP  
GO:0048364 [list] [network] root development  (1192 genes)  IMP  
GO:0048316 [list] [network] seed development  (1294 genes)  IMP  
GO CC
GO:0005968 [list] [network] Rab-protein geranylgeranyltransferase complex  (4 genes)  IDA  
GO MF
GO:0004663 [list] [network] Rab geranylgeranyltransferase activity  (4 genes)  IDA IEA  
KEGG
Protein NP_568259.1  NP_974770.1 
BLAST NP_568259.1  NP_974770.1 
Orthologous [Ortholog page] RGTB2 (ath)  LOC4346013 (osa)  LOC7481716 (ppo)  LOC25485517 (mtr)  LOC100777273 (gma)  LOC100793642 (gma)  LOC101247306 (sly)  LOC101247700 (sly)  LOC103846658 (bra)  LOC107277250 (osa)  LOC112417483 (mtr)  LOC123151282 (tae)  LOC123160925 (tae)  LOC123168368 (tae)  LOC123410584 (hvu) 
Subcellular
localization
wolf
cyto 5,  chlo 3,  nucl 1,  chlo_mito 1  (predict for NP_568259.1)
cyto 5,  chlo 3,  nucl 1,  chlo_mito 1  (predict for NP_974770.1)
Subcellular
localization
TargetP
other 5  (predict for NP_568259.1)
other 5,  scret 3  (predict for NP_974770.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with RGTB1 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
6.5 AT3G09470 Major facilitator superfamily protein [detail] 820104
6.3 AT2G25910 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein [detail] 817132
6.1 MTN1 methylthioadenosine nucleosidase 1 [detail] 830035
6.1 AT5G06450 Polynucleotidyl transferase, ribonuclease H-like superfamily protein [detail] 830533
5.3 HOL3 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [detail] 818998
Coexpressed
gene list		 [Coexpressed gene list for RGTB1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
250313_at
250313_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
250313_at
250313_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
250313_at
250313_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 831094      
Refseq ID (protein) NP_568259.1 
NP_974770.1 


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