ATTED-II : GeneID search result

[←][→] ath AT5G12440 Gene

functional annotation

Function

CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(10793 genes)

ISM

GO MF

GO:0003723 [list] [network] RNA binding	(1790 genes)	IEA
GO:0003677 [list] [network] DNA binding	(2280 genes)	IEA
GO:0046872 [list] [network] metal ion binding	(3180 genes)	IEA

KEGG

Protein

NP_001190296.1 NP_001318550.1 NP_001318551.1 NP_001332061.1 NP_001332062.1 NP_001332063.1 NP_001332064.1 NP_001332065.1 NP_001332066.1 NP_001332067.1 NP_001332068.1 NP_568277.5

BLAST

NP_001190296.1 NP_001318550.1 NP_001318551.1 NP_001332061.1 NP_001332062.1 NP_001332063.1 NP_001332064.1 NP_001332065.1 NP_001332066.1 NP_001332067.1 NP_001332068.1 NP_568277.5

Orthologous

[Ortholog page] AT3G51950 (ath) AT3G63450 (ath) LOC4332722 (osa) LOC4332723 (osa) LOC4344312 (osa) LOC7467382 (ppo) LOC7467974 (ppo) LOC7478510 (ppo) LOC11440909 (mtr) LOC11442586 (mtr) LOC25479457 (mtr) LOC25490433 (mtr) LOC100191777 (zma) LOC100192560 (zma) LOC100251683 (vvi) LOC100260228 (vvi) LOC100381877 (zma) LOC100384253 (zma) LOC100778061 (gma) LOC100797806 (gma) LOC100801341 (gma) LOC100801807 (gma) LOC100804623 (gma) LOC100818923 (gma) LOC101253233 (sly) ZAT6 (sly) ZAT12 (sly) LOC101268348 (sly) LOC101268764 (sly) LOC103653706 (zma) LOC103654303 (zma) LOC103841132 (bra) LOC103846638 (bra) LOC103855979 (bra) LOC103860736 (bra) LOC103863500 (bra) LOC104647593 (sly) LOC107277964 (osa)

Subcellular
localization
wolf

nucl 9, cyto 1, vacu 1	(predict for NP_001190296.1)
nucl 9, cyto 1, vacu 1	(predict for NP_001318550.1)
extr 4, vacu 2, E.R. 1, chlo 1, plas 1, golg 1, golg_plas 1, cyto_E.R. 1	(predict for NP_001318551.1)
nucl 9, cyto 1, vacu 1	(predict for NP_001332061.1)
extr 4, vacu 2, E.R. 1, chlo 1, plas 1, golg 1, golg_plas 1, cyto_E.R. 1	(predict for NP_001332062.1)
nucl 9, cyto 1, vacu 1	(predict for NP_001332063.1)
extr 4, vacu 2, E.R. 1, chlo 1, plas 1, golg 1, golg_plas 1, cyto_E.R. 1	(predict for NP_001332064.1)
nucl 9, cyto 1, vacu 1	(predict for NP_001332065.1)
extr 4, vacu 2, E.R. 1, chlo 1, plas 1, golg 1, golg_plas 1, cyto_E.R. 1	(predict for NP_001332066.1)
extr 4, vacu 2, E.R. 1, chlo 1, plas 1, golg 1, golg_plas 1, cyto_E.R. 1	(predict for NP_001332067.1)
nucl 9, cyto 1, vacu 1	(predict for NP_001332068.1)
nucl 9, cyto 1, vacu 1	(predict for NP_568277.5)

Subcellular
localization
TargetP

other 9	(predict for NP_001190296.1)
other 9	(predict for NP_001318550.1)
scret 9	(predict for NP_001318551.1)
other 9	(predict for NP_001332061.1)
scret 9	(predict for NP_001332062.1)
other 9	(predict for NP_001332063.1)
scret 9	(predict for NP_001332064.1)
other 9	(predict for NP_001332065.1)
scret 9	(predict for NP_001332066.1)
scret 9	(predict for NP_001332067.1)
other 9	(predict for NP_001332068.1)
other 9	(predict for NP_568277.5)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with AT5G12440 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
6.8	TRM8	GPI-anchored adhesin-like protein	[detail]	832749
5.8	DRD1	SNF2 domain-containing protein / helicase domain-containing protein	[detail]	816136
5.6	ROS4	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein	[detail]	820727

Coexpressed
gene list

[Coexpressed gene list for AT5G12440]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

245183_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

245183_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

245183_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	831119
Refseq ID (protein)	NP_001190296.1
	NP_001318550.1
	NP_001318551.1
	NP_001332061.1
	NP_001332062.1
	NP_001332063.1
	NP_001332064.1
	NP_001332065.1
	NP_001332066.1
	NP_001332067.1
	NP_001332068.1
	NP_568277.5

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