ATTED-II : GeneID search result

[←][→] ath AT5G25390 Gene

functional annotation

Function

Integrase-type DNA-binding superfamily protein

GO BP

GO:0009873 [list] [network] ethylene-activated signaling pathway	(191 genes)	IEA
GO:0006355 [list] [network] regulation of transcription, DNA-templated	(1984 genes)	IDA IEA

GO CC

GO:0005634 [list] [network] nucleus

(10793 genes)

IEA ISM

GO MF

GO:0003700 [list] [network] DNA-binding transcription factor activity	(1599 genes)	IDA ISS
GO:0003677 [list] [network] DNA binding	(2280 genes)	IEA

KEGG

Protein

NP_197921.1 NP_851073.1

BLAST

NP_197921.1 NP_851073.1

Orthologous

[Ortholog page] SHN2 (ath) SHN1 (ath) LOC4328653 (osa) LOC4341466 (osa) LOC7459028 (ppo) LOC7470102 (ppo) LOC7485479 (ppo) LOC11420370 (mtr) LOC11428823 (mtr) LOC11435277 (mtr) LOC11435980 (mtr) LOC11439229 (mtr) LOC100250826 (vvi) LOC100259484 (vvi) LOC100266250 (vvi) LOC100282301 (zma) LOC100778381 (gma) LOC100779921 (gma) LOC100784305 (gma) LOC100787517 (gma) LOC100794649 (gma) LOC100796962 (gma) LOC100806821 (gma) LOC100814893 (gma) LOC100819868 (gma) ERF-H3 (sly) SHINE3 (sly) LOC103836031 (bra) LOC103837090 (bra) LOC103842907 (bra) LOC103846747 (bra) LOC103848009 (bra) LOC103872327 (bra) LOC103874400 (bra)

Subcellular
localization
wolf

nucl 7, chlo 1, mito 1, cysk 1, chlo_mito 1, golg_plas 1	(predict for NP_197921.1)
chlo 3, nucl 3, mito 3, chlo_mito 3	(predict for NP_851073.1)

Subcellular
localization
TargetP

mito 8, other 3	(predict for NP_197921.1)
mito 9	(predict for NP_851073.1)

Gene coexpression

Network^*for
coexpressed
genes

Coexpressed
gene list

[Coexpressed gene list for SHN3]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

246939_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

246939_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

246939_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	832611
Refseq ID (protein)	NP_197921.1
Refseq ID (protein)	NP_851073.1

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