[←][→] ath   AT5G26780 Gene
functional annotation
Function   serine hydroxymethyltransferase 2  
GO BP
GO:0006565 [list] [network] L-serine catabolic process  (7 genes)  IBA  
GO:0019264 [list] [network] glycine biosynthetic process from serine  (7 genes)  IBA  
GO:1904482 [list] [network] cellular response to tetrahydrofolate  (7 genes)  IBA  
GO:0046655 [list] [network] folic acid metabolic process  (13 genes)  IBA  
GO:0006544 [list] [network] glycine metabolic process  (17 genes)  IBA  
GO:0006730 [list] [network] one-carbon metabolic process  (29 genes)  IBA  
GO:0046653 [list] [network] tetrahydrofolate metabolic process  (29 genes)  IBA  
GO CC
GO:0005747 [list] [network] mitochondrial respiratory chain complex I  (56 genes)  IDA  
GO:0005829 [list] [network] cytosol  (3506 genes)  IDA  
GO:0005739 [list] [network] mitochondrion  (4405 genes)  IDA  
GO:0009507 [list] [network] chloroplast  (5095 genes)  ISM  
GO:0009536 [list] [network] plastid  (5519 genes)  HDA  
GO MF
GO:0004372 [list] [network] glycine hydroxymethyltransferase activity  (7 genes)  IBA  
GO:0070905 [list] [network] serine binding  (7 genes)  IBA  
GO:0016597 [list] [network] amino acid binding  (26 genes)  IBA  
GO:0050897 [list] [network] cobalt ion binding  (51 genes)  IBA IDA  
GO:0030170 [list] [network] pyridoxal phosphate binding  (84 genes)  IBA  
GO:0008270 [list] [network] zinc ion binding  (554 genes)  IBA IDA  
KEGG ath00260 [list] [network] Glycine, serine and threonine metabolism (70 genes)
ath00460 [list] [network] Cyanoamino acid metabolism (69 genes)
ath00630 [list] [network] Glyoxylate and dicarboxylate metabolism (78 genes)
ath00670 [list] [network] One carbon pool by folate (20 genes)
ath01200 [list] [network] Carbon metabolism (273 genes)
ath01230 [list] [network] Biosynthesis of amino acids (251 genes)
Protein NP_001331385.1  NP_568488.2  NP_851080.1  NP_851081.1 
BLAST NP_001331385.1  NP_568488.2  NP_851080.1  NP_851081.1 
Orthologous [Ortholog page] SHM1 (ath)  LOC4334048 (osa)  LOC7461838 (ppo)  LOC7497767 (ppo)  LOC11405458 (mtr)  LOC11429401 (mtr)  LOC100243424 (vvi)  LOC100245411 (vvi)  LOC100261289 (vvi)  LOC100499634 (gma)  LOC100499635 (gma)  LOC100812952 (gma)  LOC100816213 (gma)  LOC101254439 (sly)  LOC101264818 (sly)  LOC103830855 (bra)  LOC103831657 (bra)  LOC103835059 (bra)  LOC103856643 (bra)  LOC113664104 (zma) 
Subcellular
localization
wolf
mito 8,  chlo 2  (predict for NP_001331385.1)
mito 7,  chlo 3  (predict for NP_568488.2)
mito 8,  chlo 2  (predict for NP_851080.1)
mito 7,  chlo 3  (predict for NP_851081.1)
Subcellular
localization
TargetP
mito 8,  chlo 3  (predict for NP_001331385.1)
mito 8,  chlo 3  (predict for NP_568488.2)
mito 8,  chlo 3  (predict for NP_851080.1)
mito 8,  chlo 3  (predict for NP_851081.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00010 Glycolysis / Gluconeogenesis 3
ath00030 Pentose phosphate pathway 3
ath00051 Fructose and mannose metabolism 3
ath00230 Purine metabolism 2
Genes directly connected with SHM2 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
6.0 AT1G20950 Phosphofructokinase family protein [detail] 838689
6.0 AT4G11120 translation elongation factor Ts (EF-Ts) [detail] 826713
5.5 PRMT4A protein arginine methyltransferase 4A [detail] 834961
Coexpressed
gene list		 [Coexpressed gene list for SHM2]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
246800_at
246800_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
246800_at
246800_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
246800_at
246800_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 832736      
Refseq ID (protein) NP_001331385.1 
NP_568488.2 
NP_851080.1 
NP_851081.1 


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