[←][→] ath   At5g26780 Gene
functional annotation
Function   serine hydroxymethyltransferase 2      
GO BP
GO:0006544 [list] [network] glycine metabolic process  (6 genes)  IDA  
GO:0006563 [list] [network] L-serine metabolic process  (15 genes)  IDA  
GO CC
GO:0005747 [list] [network] mitochondrial respiratory chain complex I  (56 genes)  IDA  
GO:0005739 [list] [network] mitochondrion  (4228 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5004 genes)  ISM  
GO:0009536 [list] [network] plastid  (5425 genes)  HDA  
GO MF
GO:0004372 [list] [network] glycine hydroxymethyltransferase activity  (3 genes)  IDA  
GO:0050897 [list] [network] cobalt ion binding  (44 genes)  HDA  
GO:0008270 [list] [network] zinc ion binding  (429 genes)  HDA  
KEGG ath00260 [list] [network] Glycine, serine and threonine metabolism (70 genes)
ath00460 [list] [network] Cyanoamino acid metabolism (71 genes)
ath00630 [list] [network] Glyoxylate and dicarboxylate metabolism (78 genes)
ath00670 [list] [network] One carbon pool by folate (21 genes)
ath01200 [list] [network] Carbon metabolism (273 genes)
ath01230 [list] [network] Biosynthesis of amino acids (244 genes)
ath01240 [list] [network] Biosynthesis of cofactors (236 genes)
Protein NP_001331385.1  NP_568488.2  NP_851080.1  NP_851081.1 
BLAST NP_001331385.1  NP_568488.2  NP_851080.1  NP_851081.1 
Orthologous [Ortholog page] SHM1 (ath)  LOC4334048 (osa)  LOC7455512 (ppo)  LOC7461838 (ppo)  LOC7497767 (ppo)  LOC11405458 (mtr)  LOC11429401 (mtr)  LOC100499634 (gma)  LOC100499635 (gma)  LOC100779843 (gma)  LOC100812952 (gma)  LOC100816213 (gma)  LOC101254439 (sly)  LOC101264818 (sly)  LOC103830855 (bra)  LOC103831657 (bra)  LOC103835059 (bra)  LOC103856643 (bra)  LOC123086926 (tae)  LOC123091051 (tae)  LOC123096060 (tae)  LOC123447720 (hvu) 
Subcellular
localization
wolf
mito 8,  chlo 2  (predict for NP_001331385.1)
mito 7,  chlo 3  (predict for NP_568488.2)
mito 8,  chlo 2  (predict for NP_851080.1)
mito 7,  chlo 3  (predict for NP_851081.1)
Subcellular
localization
TargetP
mito 8,  chlo 3  (predict for NP_001331385.1)
mito 8,  chlo 3  (predict for NP_568488.2)
mito 8,  chlo 3  (predict for NP_851080.1)
mito 8,  chlo 3  (predict for NP_851081.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00630 Glyoxylate and dicarboxylate metabolism 5
ath00010 Glycolysis / Gluconeogenesis 4
ath01200 Carbon metabolism 4
ath00230 Purine metabolism 3
ath00030 Pentose phosphate pathway 3
Genes directly connected with SHM2 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
7.7 AT1G20950 Phosphofructokinase family protein [detail] 838689
7.5 AT4G11120 translation elongation factor Ts (EF-Ts) [detail] 826713
6.2 UGP1 UDP-GLUCOSE PYROPHOSPHORYLASE 1 [detail] 821313
5.7 AT2G35120 Single hybrid motif superfamily protein [detail] 818078
Coexpressed
gene list		 [Coexpressed gene list for SHM2]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
246800_at
246800_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
246800_at
246800_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
246800_at
246800_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 832736      
Refseq ID (protein) NP_001331385.1 
NP_568488.2 
NP_851080.1 
NP_851081.1 


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