[←][→] ath   At5g27620 Gene
functional annotation
Function   cyclin H;1    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:1990069 [list] [network] stomatal opening  (5 genes)  IMP  
GO:2000070 [list] [network] regulation of response to water deprivation  (40 genes)  IMP  
GO:0072593 [list] [network] reactive oxygen species metabolic process  (47 genes)  IMP  
GO:0010119 [list] [network] regulation of stomatal movement  (105 genes)  IMP  
GO:0009637 [list] [network] response to blue light  (160 genes)  IMP  
GO:0009414 [list] [network] response to water deprivation  (1006 genes)  IMP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1656 genes)  IEP  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA ISM  
GO:0005737 [list] [network] cytoplasm  (13880 genes)  IDA  
GO MF
GO:0004672 [list] [network] protein kinase activity  (768 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath03022 [list] [network] Basal transcription factors (55 genes)
ath03420 [list] [network] Nucleotide excision repair (62 genes)
Protein NP_001330468.1  NP_001330469.1  NP_198114.2 
BLAST NP_001330468.1  NP_001330469.1  NP_198114.2 
Orthologous [Ortholog page] LOC547736 (gma)  LOC4334040 (osa)  LOC11415666 (mtr)  LOC18098692 (ppo)  LOC100800023 (gma)  LOC101246966 (sly)  LOC101248768 (sly)  LOC103837174 (bra)  LOC103854664 (bra)  LOC123086938 (tae)  LOC123091038 (tae)  LOC123096046 (tae)  LOC123447709 (hvu) 
Subcellular
localization
wolf
chlo 3,  chlo_mito 3,  mito 1,  nucl 1,  pero 1,  cyto 1,  plas 1,  cysk 1,  cysk_plas 1,  cyto_plas 1  (predict for NP_001330468.1)
nucl 3,  mito 3,  chlo 2,  cyto 1,  plas 1,  cysk 1,  cysk_plas 1,  cyto_plas 1  (predict for NP_001330469.1)
mito 4,  nucl 2,  mito_plas 2,  chlo 1,  cyto 1,  cysk_nucl 1,  nucl_plas 1  (predict for NP_198114.2)
Subcellular
localization
TargetP
other 5,  mito 4  (predict for NP_001330468.1)
other 5,  mito 4  (predict for NP_001330469.1)
other 5,  mito 4  (predict for NP_198114.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 6
Genes directly connected with CYCH;1 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.5 ATRPAC42 DNA-directed RNA polymerase family protein [detail] 842377
8.5 MEE49 Ribosomal RNA processing Brix domain protein [detail] 828136
7.4 AT1G63810 nucleolar protein [detail] 842684
Coexpressed
gene list		 [Coexpressed gene list for CYCH;1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
246762_at
246762_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
246762_at
246762_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
246762_at
246762_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 832824      
Refseq ID (protein) NP_001330468.1 
NP_001330469.1 
NP_198114.2 


The preparation time of this page was 0.5 [sec].