[←][→] ath   AT5G38530 Gene
functional annotation
Function   tryptophan synthase beta type 2  
GO BP
GO:0000162 [list] [network] tryptophan biosynthetic process  (22 genes)  IBA IDA  
GO CC
GO:0005829 [list] [network] cytosol  (3506 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5095 genes)  ISM  
GO MF
GO:0052684 [list] [network] L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity  (1 genes)  IBA IDA  
GO:0004834 [list] [network] tryptophan synthase activity  (6 genes)  IEA  
GO:0030170 [list] [network] pyridoxal phosphate binding  (84 genes)  IEA  
GO:0042803 [list] [network] protein homodimerization activity  (158 genes)  IDA  
KEGG ath00260 [list] [network] Glycine, serine and threonine metabolism (70 genes)
ath00400 [list] [network] Phenylalanine, tyrosine and tryptophan biosynthesis (56 genes)
ath01230 [list] [network] Biosynthesis of amino acids (251 genes)
Protein NP_198669.1 
BLAST NP_198669.1 
Orthologous [Ortholog page] LOC4341584 (osa)  LOC25495527 (mtr)  LOC100261704 (vvi)  LOC100802258 (gma)  LOC101261400 (sly)  LOC103850119 (bra)  LOC103863791 (bra)  LOC103864163 (bra)  LOC109623449 (zma) 
Subcellular
localization
wolf
cyto 6,  nucl 2,  chlo 1  (predict for NP_198669.1)
Subcellular
localization
TargetP
chlo 6  (predict for NP_198669.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00480 Glutathione metabolism 3
ath00500 Starch and sucrose metabolism 2
ath00940 Phenylpropanoid biosynthesis 2
ath01200 Carbon metabolism 2
ath00260 Glycine, serine and threonine metabolism 2
Genes directly connected with TSBtype2 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
5.9 AT5G19440 NAD(P)-binding Rossmann-fold superfamily protein [detail] 832064
5.8 CAD1 cinnamyl-alcohol dehydrogenase [detail] 843600
4.9 AT5G17380 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein [detail] 831604
4.0 GUS3 glucuronidase 3 [detail] 833437
Coexpressed
gene list		 [Coexpressed gene list for TSBtype2]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
249515_at
249515_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
249515_at
249515_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
249515_at
249515_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 833841      
Refseq ID (protein) NP_198669.1 


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