[←][→] ath   At5g39510 Gene
functional annotation
Function   Vesicle transport v-SNARE family protein      
GO BP
GO:0075733 [list] [network] intracellular transport of virus  (2 genes)  IMP  
GO:0080171 [list] [network] lytic vacuole organization  (5 genes)  IMP  
GO:0006896 [list] [network] Golgi to vacuole transport  (9 genes)  IGI  
GO:0006906 [list] [network] vesicle fusion  (9 genes)  IDA  
GO:0006623 [list] [network] protein targeting to vacuole  (30 genes)  IMP  
GO:0009630 [list] [network] gravitropism  (103 genes)  IMP  
GO CC
GO:0030140 [list] [network] trans-Golgi network transport vesicle  (11 genes)  IDA  
GO:0005770 [list] [network] late endosome  (43 genes)  IDA TAS  
GO:0005774 [list] [network] vacuolar membrane  (157 genes)  HDA  
GO:0005802 [list] [network] trans-Golgi network  (268 genes)  IDA TAS  
GO:0000325 [list] [network] plant-type vacuole  (785 genes)  HDA  
GO:0005773 [list] [network] vacuole  (971 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2559 genes)  RCA  
GO:0009536 [list] [network] plastid  (5425 genes)  HDA  
GO MF
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath04130 [list] [network] SNARE interactions in vesicular transport (47 genes)
Protein NP_198767.1 
BLAST NP_198767.1 
Orthologous [Ortholog page] VTI13 (ath)  VTI1B (ath)  LOC4327678 (osa)  LOC7480581 (ppo)  LOC7492914 (ppo)  LOC7495993 (ppo)  LOC7498189 (ppo)  LOC11412506 (mtr)  LOC11416325 (mtr)  LOC11422160 (mtr)  LOC25488812 (mtr)  LOC100500007 (gma)  LOC100527319 (gma)  LOC100801744 (gma)  LOC100815385 (gma)  LOC100816145 (gma)  LOC101266321 (sly)  LOC103829198 (bra)  LOC103837204 (bra)  LOC103849621 (bra)  LOC104647326 (sly)  LOC112325916 (ppo)  LOC123061759 (tae)  LOC123065305 (tae)  LOC123070413 (tae)  LOC123078855 (tae)  LOC123142906 (tae)  LOC123444230 (hvu)  LOC123448155 (hvu) 
Subcellular
localization
wolf
golg 4,  chlo 1,  plas 1,  nucl 1,  cyto 1,  mito 1,  vacu 1,  cyto_nucl 1,  cysk_plas 1,  E.R._plas 1  (predict for NP_198767.1)
Subcellular
localization
TargetP
other 8  (predict for NP_198767.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 5
Genes directly connected with SGR4 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
8.5 AT5G06260 TLD-domain containing nucleolar protein [detail] 830513
7.6 AT1G17080 Ribosomal protein L18ae family [detail] 838278
7.5 VAMP727 vesicle-associated membrane protein 727 [detail] 824597
7.1 CID6 CTC-interacting domain 6 [detail] 832629
7.1 AT1G09920 TRAF-type zinc finger-like protein [detail] 837524
7.0 VAM3 Syntaxin/t-SNARE family protein [detail] 834730
6.8 AT2G26230 uricase / urate oxidase / nodulin 35 [detail] 817163
6.8 VPS26A vacuolar protein sorting 26A [detail] 835435
6.5 UBC34 ubiquitin-conjugating enzyme 34 [detail] 838300
6.5 VPS60.2 SNF7 family protein [detail] 830364
6.4 VPS2.3 vacuolar protein sorting-associated protein 2.3 [detail] 839362
6.2 RAB1C RAB GTPase homolog 1C [detail] 827468
5.5 CCT1 phosphorylcholine cytidylyltransferase [detail] 817786
Coexpressed
gene list		 [Coexpressed gene list for SGR4]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
249453_at
249453_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
249453_at
249453_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
249453_at
249453_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 833947      
Refseq ID (protein) NP_198767.1 


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