[←][→] ath   AT5G47620 Gene
functional annotation
Function   RNA-binding (RRM/RBD/RNP motifs) family protein  
GO BP
GO CC
GO:0009507 [list] [network] chloroplast  (5095 genes)  ISM  
GO MF
KEGG ath03015 [list] [network] mRNA surveillance pathway (115 genes)
Protein NP_001190485.1  NP_001330287.1  NP_568685.1  NP_851149.1  NP_974899.2 
BLAST NP_001190485.1  NP_001330287.1  NP_568685.1  NP_851149.1  NP_974899.2 
Orthologous [Ortholog page] AT3G07810 (ath)  AT4G26650 (ath)  AT5G55550 (ath)  LOC4343740 (osa)  LOC4350986 (osa)  LOC7458263 (ppo)  LOC7458520 (ppo)  LOC7471858 (ppo)  LOC7485083 (ppo)  LOC11416649 (mtr)  LOC11424064 (mtr)  LOC11438007 (mtr)  LOC100216861 (zma)  LOC100246008 (vvi)  LOC100267443 (vvi)  LOC100273889 (zma)  LOC100279976 (zma)  LOC100788515 (gma)  LOC100794390 (gma)  LOC100795907 (gma)  LOC100799330 (gma)  LOC100805131 (gma)  LOC100814628 (gma)  LOC101250612 (sly)  LOC101256558 (sly)  LOC101260293 (sly)  LOC101260528 (sly)  LOC101261462 (sly)  LOC101266100 (sly)  LOC103632085 (zma)  LOC103647784 (zma)  LOC103827631 (bra)  LOC103834000 (bra)  LOC103839516 (bra)  LOC103849048 (bra)  LOC103853827 (bra)  LOC103856982 (bra)  LOC103859241 (bra)  LOC103861645 (bra)  LOC103866428 (bra)  LOC103870631 (bra) 
Subcellular
localization
wolf
nucl 8,  cyto 1,  mito 1,  cysk 1  (predict for NP_001190485.1)
nucl 8,  cysk 1  (predict for NP_001330287.1)
nucl 8,  cysk 1  (predict for NP_568685.1)
nucl 8,  cysk 1  (predict for NP_851149.1)
chlo 5,  nucl 2,  cyto 1,  vacu 1  (predict for NP_974899.2)
Subcellular
localization
TargetP
other 8  (predict for NP_001190485.1)
other 8  (predict for NP_001330287.1)
other 8  (predict for NP_568685.1)
other 8  (predict for NP_851149.1)
chlo 4  (predict for NP_974899.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 2
ath00790 Folate biosynthesis 2
Genes directly connected with AT5G47620 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
5.9 AT3G08505 zinc finger (CCCH-type/C3HC4-type RING finger) family protein [detail] 819998
5.6 AT3G59910 Ankyrin repeat family protein [detail] 825161
5.4 AT1G13640 Phosphatidylinositol 3- and 4-kinase family protein [detail] 837925
4.4 LCR Galactose oxidase/kelch repeat superfamily protein [detail] 839623
Coexpressed
gene list		 [Coexpressed gene list for AT5G47620]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
248758_at
248758_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
248758_at
248758_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
248758_at
248758_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 834812      
Refseq ID (protein) NP_001190485.1 
NP_001330287.1 
NP_568685.1 
NP_851149.1 
NP_974899.2 


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