ATTED-II : GeneID search result

[←][→] ath AT5G52040 Gene

functional annotation

Function

RNA-binding (RRM/RBD/RNP motifs) family protein

GO BP

GO:0031053 [list] [network] primary miRNA processing	(12 genes)	IGI
GO:0000381 [list] [network] regulation of alternative mRNA splicing, via spliceosome	(30 genes)	IBA
GO:0045292 [list] [network] mRNA cis splicing, via spliceosome	(38 genes)	IBA
GO:0000398 [list] [network] mRNA splicing, via spliceosome	(172 genes)	ISS
GO:0008380 [list] [network] RNA splicing	(272 genes)	NAS

GO CC

GO:0010445 [list] [network] nuclear dicing body	(6 genes)	IDA
GO:0016607 [list] [network] nuclear speck	(86 genes)	IBA
GO:0005681 [list] [network] spliceosomal complex	(142 genes)	ISS
GO:0005634 [list] [network] nucleus	(10793 genes)	IBA ISM
GO:0005737 [list] [network] cytoplasm	(14855 genes)	ISM

GO MF

GO:0003729 [list] [network] mRNA binding	(1026 genes)	IDA
GO:0003723 [list] [network] RNA binding	(1790 genes)	IBA
GO:0005515 [list] [network] protein binding	(4605 genes)	IPI

KEGG

ath03040 [list] [network] Spliceosome (192 genes)

Protein

NP_001154773.1 NP_001154774.1 NP_001330347.1 NP_001330348.1 NP_001330349.1 NP_200017.2 NP_851174.1

BLAST

NP_001154773.1 NP_001154774.1 NP_001330347.1 NP_001330348.1 NP_001330349.1 NP_200017.2 NP_851174.1

Orthologous

[Ortholog page] RS40 (ath) LOC4328133 (osa) LOC7454468 (ppo) LOC7464900 (ppo) LOC7482121 (ppo) LOC11422261 (mtr) LOC25500953 (mtr) LOC100193841 (zma) LOC100262670 (vvi) LOC100281308 (zma) LOC100781534 (gma) LOC100796509 (gma) LOC100797778 (gma) LOC100815452 (gma) LOC101246991 (sly) LOC101263057 (sly) LOC101264097 (sly) LOC103834867 (bra) LOC103857154 (bra) LOC103863268 (bra)

Subcellular
localization
wolf

nucl 10	(predict for NP_001154773.1)
nucl 10	(predict for NP_001154774.1)
nucl 10	(predict for NP_001330347.1)
nucl 10	(predict for NP_001330348.1)
nucl 10	(predict for NP_001330349.1)
nucl 10	(predict for NP_200017.2)
nucl 10	(predict for NP_851174.1)

Subcellular
localization
TargetP

other 7	(predict for NP_001154773.1)
other 8	(predict for NP_001154774.1)
other 9	(predict for NP_001330347.1)
other 9	(predict for NP_001330348.1)
other 8	(predict for NP_001330349.1)
other 9	(predict for NP_200017.2)
other 9	(predict for NP_851174.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	13

Genes directly connected with RS41 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
8.6	SR34a	SER/ARG-rich protein 34A	[detail]	824105
8.5	U1-70K	U1 small nuclear ribonucleoprotein-70K	[detail]	824230
7.9	RS2Z32	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein	[detail]	824518
7.6	NF-YC11	nuclear factor Y, subunit C11	[detail]	820427
7.5	SCL30A	SC35-like splicing factor 30A	[detail]	820559
7.0	RS40	arginine/serine-rich splicing factor 35	[detail]	828654
6.8	AtRZ-1b	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein	[detail]	842359
6.6	AT5G11760	stress response protein	[detail]	831048
6.2	RBP45B	RNA-binding (RRM/RBD/RNP motifs) family protein	[detail]	837708
5.7	AT3G52100	RING/FYVE/PHD-type zinc finger family protein	[detail]	824373
5.0	NAC050	NAC domain containing protein 50	[detail]	820212

Coexpressed
gene list

[Coexpressed gene list for RS41]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

248369_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

248369_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

248369_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	835279
Refseq ID (protein)	NP_001154773.1
	NP_001154774.1
	NP_001330347.1
	NP_001330348.1
	NP_001330349.1
	NP_200017.2
	NP_851174.1

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