[←][→] ath   At5g52040 Gene
functional annotation
Function   RNA-binding (RRM/RBD/RNP motifs) family protein      
GO BP
GO:0031053 [list] [network] primary miRNA processing  (9 genes)  IGI  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (105 genes)  ISS  
GO:0008380 [list] [network] RNA splicing  (191 genes)  NAS  
GO CC
GO:0010445 [list] [network] nuclear dicing body  (6 genes)  IDA  
GO:0005681 [list] [network] spliceosomal complex  (14 genes)  ISS  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (13880 genes)  ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1535 genes)  HDA IDA  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath03040 [list] [network] Spliceosome (203 genes)
Protein NP_001154773.1  NP_001154774.1  NP_001330347.1  NP_001330348.1  NP_001330349.1  NP_200017.2  NP_851174.1 
BLAST NP_001154773.1  NP_001154774.1  NP_001330347.1  NP_001330348.1  NP_001330349.1  NP_200017.2  NP_851174.1 
Orthologous [Ortholog page] RS31a (ath)  RS31 (ath)  RS40 (ath)  LOC4328133 (osa)  LOC4334964 (osa)  LOC7454468 (ppo)  LOC7464900 (ppo)  LOC7482121 (ppo)  LOC7492794 (ppo)  LOC7494037 (ppo)  LOC7497271 (ppo)  LOC11422261 (mtr)  LOC11445062 (mtr)  LOC25500953 (mtr)  LOC100781534 (gma)  LOC100796509 (gma)  LOC100797709 (gma)  LOC100797778 (gma)  LOC100801043 (gma)  LOC100815452 (gma)  LOC101246991 (sly)  LOC101258786 (sly)  LOC101263057 (sly)  LOC101264097 (sly)  LOC101266564 (sly)  LOC103834867 (bra)  LOC103857154 (bra)  LOC103863268 (bra)  LOC103866451 (bra)  LOC123050970 (tae)  LOC123094071 (tae)  LOC123099280 (tae)  LOC123106211 (tae)  LOC123131876 (tae)  LOC123135841 (tae)  LOC123143365 (tae)  LOC123186938 (tae)  LOC123401142 (hvu)  LOC123431480 (hvu)  LOC123450013 (hvu) 
Subcellular
localization
wolf
nucl 10  (predict for NP_001154773.1)
nucl 10  (predict for NP_001154774.1)
nucl 10  (predict for NP_001330347.1)
nucl 10  (predict for NP_001330348.1)
nucl 10  (predict for NP_001330349.1)
nucl 10  (predict for NP_200017.2)
nucl 10  (predict for NP_851174.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001154773.1)
other 8  (predict for NP_001154774.1)
other 9  (predict for NP_001330347.1)
other 9  (predict for NP_001330348.1)
other 8  (predict for NP_001330349.1)
other 9  (predict for NP_200017.2)
other 9  (predict for NP_851174.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 12
Genes directly connected with RS41 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
8.8 SR34a SER/ARG-rich protein 34A [detail] 824105
8.0 RS2Z32 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein [detail] 824518
7.9 RS2Z33 arginine/serine-rich zinc knuckle-containing protein 33 [detail] 818311
7.0 RS40 arginine/serine-rich splicing factor 35 [detail] 828654
6.8 NAC052 NAC domain containing protein 52 [detail] 820213
6.6 RBP45B RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 837708
6.3 NF-YC11 nuclear factor Y, subunit C11 [detail] 820427
5.0 NAC050 NAC domain containing protein 50 [detail] 820212
Coexpressed
gene list		 [Coexpressed gene list for RS41]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
248369_at
248369_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
248369_at
248369_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
248369_at
248369_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 835279      
Refseq ID (protein) NP_001154773.1 
NP_001154774.1 
NP_001330347.1 
NP_001330348.1 
NP_001330349.1 
NP_200017.2 
NP_851174.1 


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