[←][→] ath   AT5G53440 Gene
functional annotation
Function   LOW protein: zinc finger CCCH domain protein  
GO BP
GO CC
GO:0005829 [list] [network] cytosol  (3506 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
KEGG
Protein NP_001331244.1  NP_200156.1 
BLAST NP_001331244.1  NP_200156.1 
Orthologous [Ortholog page] LOC4324178 (osa)  LOC7464258 (ppo)  LOC7464551 (ppo)  LOC11413329 (mtr)  LOC100265054 (vvi)  LOC100265790 (vvi)  LOC100810264 (gma)  LOC100814864 (gma)  LOC101254818 (sly)  LOC103636131 (zma)  LOC103651410 (zma)  LOC103857080 (bra) 
Subcellular
localization
wolf
nucl 9,  chlo 1,  plas 1  (predict for NP_001331244.1)
nucl 9,  chlo 1,  plas 1  (predict for NP_200156.1)
Subcellular
localization
TargetP
other 5,  mito 3  (predict for NP_001331244.1)
other 5,  mito 3  (predict for NP_200156.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
Genes directly connected with AT5G53440 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
11.5 DOT2 SART-1 family [detail] 831541
10.0 AT3G49601 pre-mRNA-splicing factor [detail] 6241216
9.7 FIP1[V] FIP1[V]-like protein [detail] 835916
8.7 AT3G09850 D111/G-patch domain-containing protein [detail] 820143
8.5 AT5G20610 EEIG1/EHBP1 protein amino-terminal domain protein [detail] 832183
8.5 AT3G21290 dentin sialophosphoprotein-like protein [detail] 821683
8.4 AT1G56290 CwfJ-like family protein [detail] 842082
8.3 AT3G05670 RING/U-box protein [detail] 819734
7.9 AT4G12670 Homeodomain-like superfamily protein [detail] 826879
7.8 ELF6 Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein [detail] 830303
7.3 AT5G12120 Ubiquitin-associated/translation elongation factor EF1B protein [detail] 831085
6.7 AT1G32530 RING/U-box superfamily protein [detail] 840147
6.5 AT1G21160 eukaryotic translation initiation factor 2 (eIF-2) family protein [detail] 838712
Coexpressed
gene list		 [Coexpressed gene list for AT5G53440]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
248266_at
248266_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
248266_at
248266_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
248266_at
248266_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 835425      
Refseq ID (protein) NP_001331244.1 
NP_200156.1 


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