[←][→] ath   At5g59950 Gene
functional annotation
Function   RNA-binding (RRM/RBD/RNP motifs) family protein      
GO BP
GO CC
GO:0005654 [list] [network] nucleoplasm  (253 genes)  IDA  
GO:0005730 [list] [network] nucleolus  (387 genes)  IDA  
GO:0009536 [list] [network] plastid  (5425 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1535 genes)  HDA IDA  
KEGG ath03013 [list] [network] Nucleocytoplasmic transport (103 genes)
ath03015 [list] [network] mRNA surveillance pathway (119 genes)
ath03040 [list] [network] Spliceosome (203 genes)
Protein NP_001119461.1  NP_001190572.1  NP_200803.3  NP_851229.1  NP_974965.1 
BLAST NP_001119461.1  NP_001190572.1  NP_200803.3  NP_851229.1  NP_974965.1 
Orthologous [Ortholog page] AT5G02530 (ath)  LOC4332426 (osa)  LOC4349526 (osa)  LOC4351236 (osa)  LOC7485720 (ppo)  LOC11446087 (mtr)  LOC18106285 (ppo)  LOC25492480 (mtr)  LOC100775827 (gma)  LOC100783362 (gma)  LOC100785926 (gma)  LOC100817317 (gma)  LOC101262878 (sly)  LOC101266904 (sly)  LOC102663782 (gma)  LOC103845414 (bra)  LOC103847441 (bra)  LOC103851533 (bra)  LOC103855473 (bra)  LOC112324551 (ppo)  LOC123085468 (tae)  LOC123086296 (tae)  LOC123091728 (tae)  LOC123092575 (tae)  LOC123096711 (tae)  LOC123097880 (tae)  LOC123103266 (tae)  LOC123111452 (tae)  LOC123120594 (tae)  LOC123448119 (hvu)  LOC123449000 (hvu)  LOC123452129 (hvu) 
Subcellular
localization
wolf
nucl 9,  chlo 1,  mito 1,  chlo_mito 1  (predict for NP_001119461.1)
nucl 7,  mito 3  (predict for NP_001190572.1)
nucl 4,  mito 4,  cyto 1,  chlo 1,  extr 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_200803.3)
nucl 6,  mito 4  (predict for NP_851229.1)
nucl 7,  mito 3  (predict for NP_974965.1)
Subcellular
localization
TargetP
chlo 7,  other 6  (predict for NP_001119461.1)
chlo 7,  other 6  (predict for NP_001190572.1)
other 8  (predict for NP_200803.3)
chlo 7,  other 6  (predict for NP_851229.1)
other 6,  chlo 6  (predict for NP_974965.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 8
ath03013 Nucleocytoplasmic transport 2
ath03015 mRNA surveillance pathway 2
Genes directly connected with AT5G59950 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
8.7 SCL30 SC35-like splicing factor 30 [detail] 824712
7.1 ATU2AF35A U2 snRNP auxiliary factor small subunit [detail] 839657
7.0 ALY4 ALWAYS EARLY 4 [detail] 833750
Coexpressed
gene list		 [Coexpressed gene list for AT5G59950]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
247653_at
247653_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
247653_at
247653_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
247653_at
247653_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 836117      
Refseq ID (protein) NP_001119461.1 
NP_001190572.1 
NP_200803.3 
NP_851229.1 
NP_974965.1 


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