[←][→] ath   At5g60230 Gene
functional annotation
Function   splicing endonuclease 2    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0006388 [list] [network] tRNA splicing, via endonucleolytic cleavage and ligation  (4 genes)  ISS  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
GO:0000213 [list] [network] tRNA-intron endonuclease activity  (1 genes)  IEA  
GO:0004518 [list] [network] nuclease activity  (160 genes)  ISS  
GO:0003676 [list] [network] nucleic acid binding  (3100 genes)  IEA  
KEGG
Protein NP_200831.1  NP_974966.1 
BLAST NP_200831.1  NP_974966.1 
Orthologous [Ortholog page] SEN1 (ath)  AT3G45577 (ath)  LOC4341203 (osa)  LOC4350867 (osa)  LOC7472137 (ppo)  LOC11414349 (mtr)  LOC100807021 (gma)  LOC100810335 (gma)  LOC101260236 (sly)  LOC103845434 (bra)  LOC103856576 (bra)  LOC107280434 (osa)  LOC123060090 (tae)  LOC123068570 (tae)  LOC123077107 (tae)  LOC123149784 (tae)  LOC123159710 (tae)  LOC123166660 (tae)  LOC123410624 (hvu)  LOC123439335 (hvu) 
Subcellular
localization
wolf
nucl 5,  cyto 2,  cysk 1,  cyto_plas 1  (predict for NP_200831.1)
nucl 4,  cyto 2,  cysk_nucl 2,  nucl_plas 2  (predict for NP_974966.1)
Subcellular
localization
TargetP
other 3  (predict for NP_200831.1)
chlo 3,  mito 3  (predict for NP_974966.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with SEN2 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
6.5 AT1G79220 Mitochondrial transcription termination factor family protein [detail] 844263
5.4 SPPL1 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 [detail] 829478
5.4 AT4G15520 tRNA/rRNA methyltransferase (SpoU) family protein [detail] 827225
5.3 CCMH cytochrome c biogenesis protein family [detail] 838089
5.2 AT3G04860 hypothetical protein (DUF868) [detail] 819646
Coexpressed
gene list		 [Coexpressed gene list for SEN2]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
247673_at
247673_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
247673_at
247673_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
247673_at
247673_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 836145      
Refseq ID (protein) NP_200831.1 
NP_974966.1 


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