[←][→] ath   At5g60600 Gene
functional annotation
Function   4-hydroxy-3-methylbut-2-enyl diphosphate synthase    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0019288 [list] [network] isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway  (8 genes)  IEA TAS  
GO:0009862 [list] [network] systemic acquired resistance, salicylic acid mediated signaling pathway  (16 genes)  IMP  
GO:0016114 [list] [network] terpenoid biosynthetic process  (129 genes)  IEA  
GO:0009617 [list] [network] response to bacterium  (1192 genes)  IMP  
GO CC
GO:0009941 [list] [network] chloroplast envelope  (582 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (705 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5004 genes)  HDA IDA  
GO:0009536 [list] [network] plastid  (5425 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
GO:0046429 [list] [network] 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity  (2 genes)  IDA IGI  
GO:0051539 [list] [network] 4 iron, 4 sulfur cluster binding  (4 genes)  IDA  
KEGG ath00900 [list] [network] Terpenoid backbone biosynthesis (61 genes)
Protein NP_001119467.1  NP_001332136.1  NP_001332137.1  NP_200868.2  NP_851233.1 
BLAST NP_001119467.1  NP_001332136.1  NP_001332137.1  NP_200868.2  NP_851233.1 
Orthologous [Ortholog page] HDS (sly)  LOC4329911 (osa)  LOC7489339 (ppo)  LOC11413255 (mtr)  LOC18098191 (ppo)  LOC100801743 (gma)  LOC100819481 (gma)  LOC103845475 (bra)  LOC123127643 (tae)  LOC123137401 (tae)  LOC123144749 (tae)  LOC123401503 (hvu) 
Subcellular
localization
wolf
chlo 8,  cyto 1  (predict for NP_001119467.1)
chlo 8,  cyto 1  (predict for NP_001332136.1)
chlo 8,  cyto 1  (predict for NP_001332137.1)
chlo 7,  cyto 2  (predict for NP_200868.2)
chlo 6,  cyto 2,  mito 1,  cysk 1  (predict for NP_851233.1)
Subcellular
localization
TargetP
chlo 8,  other 4  (predict for NP_001119467.1)
chlo 8,  other 4  (predict for NP_001332136.1)
chlo 8,  other 4  (predict for NP_001332137.1)
chlo 8,  other 4  (predict for NP_200868.2)
chlo 8,  other 4  (predict for NP_851233.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 2
ath00970 Aminoacyl-tRNA biosynthesis 2
Genes directly connected with HDS on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
9.4 VAR2 FtsH extracellular protease family [detail] 817646
8.7 CLPC1 CLPC homologue 1 [detail] 835165
8.5 PREP1 presequence protease 1 [detail] 821451
6.5 AAE15 acyl-activating enzyme 15 [detail] 827043
6.2 AT3G05350 Metallopeptidase M24 family protein [detail] 819699
Coexpressed
gene list		 [Coexpressed gene list for HDS]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
247637_at
247637_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
247637_at
247637_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
247637_at
247637_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 836181      
Refseq ID (protein) NP_001119467.1 
NP_001332136.1 
NP_001332137.1 
NP_200868.2 
NP_851233.1 


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