[←][→] ath   AT5G61060 Gene
functional annotation
Function   histone deacetylase 5  
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10793 genes)  IDA IEA ISM  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IDA  
GO MF
GO:0032041 [list] [network] NAD-dependent histone deacetylase activity (H3-K14 specific)  (12 genes)  IEA  
GO:0004407 [list] [network] histone deacetylase activity  (35 genes)  ISS  
KEGG
Protein NP_001190583.1  NP_200914.2 
BLAST NP_001190583.1  NP_200914.2 
Orthologous [Ortholog page] LOC541883 (zma)  LOC4343829 (osa)  LOC7493532 (ppo)  LOC25493882 (mtr)  LOC100250074 (vvi)  HDA6 (gma)  HDA15 (gma)  LOC101256079 (sly)  LOC103837366 (bra)  LOC103860568 (bra) 
Subcellular
localization
wolf
cyto 4,  nucl 2,  cyto_pero 2,  cyto_E.R. 2  (predict for NP_001190583.1)
cyto 4,  nucl 2,  cyto_pero 2,  cyto_E.R. 2  (predict for NP_200914.2)
Subcellular
localization
TargetP
other 9  (predict for NP_001190583.1)
other 9  (predict for NP_200914.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath00270 Cysteine and methionine metabolism 2
ath03015 mRNA surveillance pathway 2
Genes directly connected with HDA05 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
6.5 TOPP1 type one protein phosphatase 1 [detail] 817489
6.4 CNX5 co-factor for nitrate, reductase and xanthine dehydrogenase 5 [detail] 835604
5.6 TOPP7 Calcineurin-like metallo-phosphoesterase superfamily protein [detail] 826726
Coexpressed
gene list		 [Coexpressed gene list for HDA05]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
247558_at
247558_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
247558_at
247558_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
247558_at
247558_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 836227      
Refseq ID (protein) NP_001190583.1 
NP_200914.2 


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