[←][→] ath   AT5G64200 Gene
functional annotation
Function   serine/arginine-rich splicing factor-like protein, putative  
GO BP
GO:0000381 [list] [network] regulation of alternative mRNA splicing, via spliceosome  (30 genes)  IBA  
GO:0045292 [list] [network] mRNA cis splicing, via spliceosome  (38 genes)  IBA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (172 genes)  TAS  
GO:0008380 [list] [network] RNA splicing  (272 genes)  NAS  
GO CC
GO:0016607 [list] [network] nuclear speck  (86 genes)  IBA IDA  
GO:0005681 [list] [network] spliceosomal complex  (142 genes)  IEA  
GO:0005829 [list] [network] cytosol  (3506 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA  
GO MF
GO:0003729 [list] [network] mRNA binding  (1026 genes)  IDA  
GO:0003723 [list] [network] RNA binding  (1790 genes)  IBA  
KEGG ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_201225.1  NP_851261.1 
BLAST NP_201225.1  NP_851261.1 
Orthologous [Ortholog page] LOC4343955 (osa)  LOC4345884 (osa)  LOC7463216 (ppo)  LOC7486602 (ppo)  LOC11409922 (mtr)  LOC25493273 (mtr)  LOC100191156 (zma)  LOC100242306 (vvi)  LOC100243776 (vvi)  LOC100272627 (zma)  LOC100282036 (zma)  LOC100383636 (zma)  LOC100778928 (gma)  LOC100804370 (gma)  LOC101251771 (sly)  LOC101257217 (sly)  LOC103873839 (bra) 
Subcellular
localization
wolf
nucl 10  (predict for NP_201225.1)
nucl 10  (predict for NP_851261.1)
Subcellular
localization
TargetP
other 8  (predict for NP_201225.1)
other 8  (predict for NP_851261.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 12
Genes directly connected with SC35 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
10.6 RS2Z32 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein [detail] 824518
10.0 SCL30A SC35-like splicing factor 30A [detail] 820559
9.3 SR34a SER/ARG-rich protein 34A [detail] 824105
Coexpressed
gene list		 [Coexpressed gene list for SC35]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
247325_at
247325_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
247325_at
247325_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
247325_at
247325_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 836541      
Refseq ID (protein) NP_201225.1 
NP_851261.1 


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