[][] ath   AT5G64200 Gene
functional annotation
Function   serine/arginine-rich splicing factor-like protein, putative
GO BP
GO:0000381 [list] [network] regulation of alternative mRNA splicing, via spliceosome  (30 genes)  IBA  
GO:0045292 [list] [network] mRNA cis splicing, via spliceosome  (38 genes)  IBA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (172 genes)  TAS  
GO:0008380 [list] [network] RNA splicing  (272 genes)  NAS  
GO CC
GO:0016607 [list] [network] nuclear speck  (86 genes)  IBA IDA  
GO:0005681 [list] [network] spliceosomal complex  (142 genes)  IEA  
GO:0005829 [list] [network] cytosol  (3506 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA  
GO MF
GO:0003729 [list] [network] mRNA binding  (1026 genes)  IDA  
GO:0003723 [list] [network] RNA binding  (1790 genes)  IBA  
KEGG ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_201225.1  NP_851261.1 
BLAST NP_201225.1  NP_851261.1 
Orthologous [Ortholog page] LOC4343955 (osa)LOC4345884 (osa)LOC7463216 (ppo)LOC7486602 (ppo)LOC11409922 (mtr)LOC25493273 (mtr)LOC100191156 (zma)LOC100242306 (vvi)LOC100243776 (vvi)LOC100272627 (zma)LOC100282036 (zma)LOC100383636 (zma)LOC100778928 (gma)LOC100804370 (gma)LOC101251771 (sly)LOC101257217 (sly)LOC103873839 (bra)
Subcellular
localization
wolf
nucl 10  (predict for NP_201225.1)
nucl 10  (predict for NP_851261.1)
Subcellular
localization
TargetP
other 8  (predict for NP_201225.1)
other 8  (predict for NP_851261.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 12
Genes directly connected with SC35 on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
10.6 RS2Z32 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein [detail] 824518
10.0 SCL30A SC35-like splicing factor 30A [detail] 820559
9.3 SR34a SER/ARG-rich protein 34A [detail] 824105
Coexpressed
gene list
[Coexpressed gene list for SC35]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
247325_at
247325_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
247325_at
247325_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
247325_at
247325_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 836541    
Refseq ID (protein) NP_201225.1 
NP_851261.1 


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